Table 3 Inventory of algal inverted repeat sequences in chloroplast genomes
Organism | SNPs or indels found in 23S ribosomal subunit | SNPs or indels found in 16S ribosomal subunit | Inverted repeat length†| Accession number |
|---|---|---|---|---|
Haptophytes | ||||
Chrysochromulina tobin | 5 | 6 | 4656 | This work |
Emiliania huxleyi CCMP373 | 0 | 0 | 4674 | NC_007288 |
Emiliania huxleyi CCMP1516 | 0 | 0 | 4868 | JN022705 |
Phaeocystis antarctica | 0 | 0 | 4674 | JN117275 |
Phaeocystis globosa | 8 | 0 | 4611 | NC_021637 |
Pavlova lutheri | No Inverted Repeat | NC_020371 | ||
Stramenopiles | ||||
Apedinella radians | 2 | 2 | 4732 | Unpublished* |
Aureococcus anophagefferens | No Inverted Repeat | NC_012898 | ||
Aureoumbra lagunensis | No Inverted Repeat | NC_012903 | ||
Botrydium cystosum | 0 | 0 | 4924 | Unpublished* |
Ectocarpus siliculosus | 0 | 0 | 8616 | NC_013498 |
Fistulifera sp. JPCC DA0580 | 0 | 0 | 12031 | NC_015403 |
Fucus vesiculosus | 0 | 0 | 5242 | NC_016735 |
Heterosigma akashiwo | 0 | 0 | 21665 | NC_010772 |
Nannochloropsis gaditana | 0 | 0 | 5109 | NC_020014 |
Nannochloropsis oculata | 4 | 5 | 7541 | Unpublished* |
Nannochloropsis salina | 0 | 0 | 5131 | Unpublished* |
Nereocystis luetkeana | 0 | 0 | 5416 | Unpublished* |
Odontella sinensis | 0 | 0 | 7725 | NC_001713 |
Pelagomonas calceolata | No Inverted Repeat | Unpublished* | ||
Phaeodactylum tricornutum | 0 | 0 | 6916 | NC_008588 |
Pinguiococcus pyrenoidosus | 0 | 0 | 5070 | Unpublished* |
Saccharina japonica | 5 | 1 | 5312 | NC_018523 |
Synedra acus | 1 | 0 | 6795 | NC_016731 |
Synura petersenii | 0 | 0 | 22465 | Unpublished* |
Thalassiosira oceanica CCMP1005 | 0 | 0 | 23698 | NC_014808 |
Thalassiosira pseudonana | 0 | 0 | 18345 | NC_008589 |
Tribonema aequale | 0 | 3 | 5749 | Unpublished* |
Vaucheria litorea | 0 | 0 | 4935 | NC_011600 |
Cryptophytes | ||||
Cryptomonas paramecium | No Inverted Repeat | NC_013703 | ||
Guillardia theta | 3 | 2 | 4922 | NC_000926 |
Rhodomonas salina | 6 | 2 | 4959 | NC_009573 |
Chlorophytes | ||||
Acutodesmus obliquus | 0 | 0 | 12023 | NC_008101 |
Bryopsis hypnoides | No Inverted Repeat | NC_013359 | ||
Chlamydomonas renhardii | 0 | 0 | 22211 | NC_005353 |
Chlorella variabilis | No Inverted Repeat | NC_015359 | ||
Chlorella vulgaris | No Inverted Repeat | NC_001865 | ||
Coccomyxa subellipsoidea C-169 | No Inverted Repeat | NC_015084 | ||
Dunaliella salina | 0 | 0 | 14409 | NC_016732 |
Floydiella terrestris | No Inverted Repeat | NC_014346 | ||
Gonium pectorale | 0 | 0 | 14750 | NC_020438 |
Leptosira terrestris | No Inverted Repeat | NC_009681 | ||
Micromonas sp. RCC299 | 0 | 0 | 7307 | NC_012575 |
Monomastix sp. OKE-1 | No Inverted Repeat | NC_012101 | ||
Nephroselmis olivacea | 0 | 0 | 46137 | NC_000927 |
Oedogonium cardiacum | 0 | 0 | 35492 | NC_011031 |
Oltmannsiellopsis viridis | 0 | 0 | 18510 | NC_008099 |
Ostreococcus tauri | 1 | 0 | 6825 | NC_008289 |
Parachlorella kessleri | 0 | 0 | 10913 | NC_012978 |
Pedinomonas minor | 0 | 0 | 10639 | NC_016733 |
Picochlorum sp. | No Inverted Repeat | Unpublished* | ||
Pleodorina starrii | 0 | 0 | 16608 | NC_021109 |
Pseudendoclonium akinetum | 0 | 0 | 6110 | NC_008114 |
Pycnococcus provasolii | No Inverted Repeat | NC_012097 | ||
Pyramimonas parkeae | 0 | 0 | 12865 | NC_012099 |
Schizomeris leibleinii | No Inverted Repeat | NC_015645 | ||
Stigeoclonium helveticum | No Inverted Repeat | NC_008372 | ||
Trebouxiophyceae sp. MX-AZ01 | No Inverted Repeat | NC_018569 | ||
Rhodophytes | ||||
Calliarthron tuberculosum | No Inverted Repeat | NC_021075 | ||
Chondrus crispus | No Inverted Repeat | NC_020795 | ||
Cyanidioschyzon merolae strain 10D | No Inverted Repeat | NC_004799 | ||
Cyanidium caldarium | No Inverted Repeat | NC_001840 | ||
Gracilaria tenuistipitata var. liui | No Inverted Repeat | NC_006137 | ||
Grateloupia taiwanensis | No Inverted Repeat | NC_021618 | ||
Porphyra purpurea | 11 | 20 | 4827 | NC_000925 |
Pyropia haitanensis | 1 | 7 | 4828 | NC_021189 |
Pyropia yezoensis | 9 | 6 | 4827 | NC_007932 |
Euglenoids | ||||
Euglena gracilis | 0 | 0 | 6127 | NC_001603 |
Euglena viridis | No Inverted Repeat | NC_020460 | ||
Eutreptiella gymnastica | No Inverted Repeat | NC_017754 | ||
Monomorphina aenigmatica | No Inverted Repeat | NC_020018 | ||
Streptophytes | ||||
Chaetosphaeridium globosum | 0 | 0 | 12431 | NC_004115 |
Chara vulgaris | 0 | 0 | 10919 | NC_008097 |
Chlorokybus atmophyticus | 0 | 0 | 7640 | NC_008822 |
Mesostigma viride | 0 | 0 | 6056 | NC_002186 |
Staurastrum punctulatum | No Inverted Repeat | NC_008116 | ||
Zygnema circumcarinatum | No Inverted Repeat | NC_008117 | ||