Table 2 Reconstructed genomic blocks based on the synteny between A. thaliana and B. rapa
From: Functional innovations of three chronological mesohexaploid Brassica rapa genomes
AK | GB | Current GB* | Reconstructed GB | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Â | Â | Interval (Mb) | No of genes (%) | Intervals (Mb) | No of genes (%) | ||||
1 | A | At1g01560-At1g19330 | (6.48) | 2,528 | (7.19) | At1g01010-At1g19840 | (6.87) | 2,690 | (7.65) |
1 | B | At1g19850-At1g36240 | (6.73) | 1,949 | (5.54) | At1g19850-At1g37130 | (7.27) | 1,986 | (5.65) |
1 | C | At1g43600-At1g56120 | (4.84) | 1,404 | (3.99) | At1g43020-At1g56190 | (4.88) | 1,418 | (4.03) |
2 | D | At1g63770-At1g56530 | (2.49) | 744 | (2.12) | At1g64670-At1g56210 | (3.00) | 913 | (2.60) |
2 | E | At1g65040-At1g80420 | (6.08) | 2,086 | (5.93) | At1g64960-At1g80950 | (6.29) | 2,163 | (6.15) |
3 | F | At3g01040-At3g25520 | (9.26) | 3,423 | (9.73) | At3g01015-At3g25520 | (9.27) | 3,427 | (9.74) |
3 | G | At2g05170-At2g07690 | (1.66) | 229 | (0.65) | At2g05170-At2g07690 | (1.66) | 229 | (0.65) |
3 | H | At2g15670-At2g20900 | (2.16) | 669 | (1.90) | At2g10940-At2g20900 | (4.68) | 940 | (2.67) |
4 | I | At2g20920-At2g28910 | (3.42) | 1,091 | (3.10) | At2g20920-At2g31035 | (4.21) | 1,385 | (3.94) |
4 | J | At2g31040-At2g47730 | (6.35) | 2,400 | (6.82) | At2g31040-At2g48150 | (6.48) | 2,465 | (7.01) |
5 | K | At2g01250-At2g03750 | (1.02) | 326 | (0.93) | At2g01060-At2g05160 | (1.79) | 508 | (1.44) |
5 | L | At3g25855-At3g29770 | (2.19) | 531 | (1.51) | At3g25540-At3g32960 | (4.23) | 684 | (1.94) |
5 | M | At3g43740-At3g49970 | (2.88) | 789 | (2.24) | At3g42180-At3g50940 | (4.61) | 1,001 | (2.85) |
5 | N | At3g50950-At3g62790 | (4.31) | 1,678 | (4.77) | At3g50950-At3g63530 | (4.52) | 1,771 | (5.03) |
6 | O | At4g00030-At4g04955 | (2.51) | 633 | (1.80) | At4g00026-At4g05450 | (2.75) | 708 | (2.01) |
6 | P | At4g12070-At4g08690 | (1.72) | 434 | (1.23) | At4g07390-At4g12620 | (3.27) | 595 | (1.69) |
6 | Q | At5g28885-At5g23010 | (3.20) | 741 | (2.11) | At5g30510-At5g23010 | (3.92) | 771 | (2.19) |
6 | R | At5g23000-At5g01010 | (7.70) | 2,825 | (8.03) | At5g23000-At5g01010 | (7.70) | 2,825 | (8.03) |
7 | S | At5g41900-At5g33210 | (4.31) | 853 | (2.42) | At5g42110- At5g32470 | (4.75) | 886 | (2.52) |
7 | T | At4g12750-At4g16143 | (1.64) | 526 | (1.50) | At4g12700-At4g16240 | (1.71) | 556 | (1.58) |
7 | U | At4g16250-At4g38770 | (8.90) | 3,252 | (9.24) | At4g16250-At4g40100 | (9.39) | 3,446 | (9.80) |
8 | V | At5g42130-At5g42810 | (0.33) | 97 | (0.28) | At5g42130-At5g47810 | (2.52) | 805 | (2.29) |
8 | W | At5g47820-At5g60800 | (5.10) | 1,805 | (5.13) | At5g47820-At5g60800 | (5.10) | 1,805 | (5.13) |
8 | X | At5g60805-At5g67385 | (2.42) | 957 | (2.72) | At5g60805-At5g67640 | (2.51) | 991 | (2.82) |
Total | Â | (97.69) | 31,971 | (90.89) | Â | (113.34) | 34,968 | (99.41) | |