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Table 2 Methylation classification using the binomial and Bis-Class methods

From: Bis-class: a new classification tool of methylation status using bayes classifier and local methylation information

Species

Subtype

Sample ID

P ^ 0 (experiment)

P ^ 0 (EM)

P ^ 1 (EM)

E F ^ (CpG only)

π ^ 1 G (CpG only)

π ^ 1 G (p1=0.95) (CpG only)

Count of mCpG (binomial)

Count of mCpG (Bis-Class)

Honey Bee

Worker

SRR039814

0.0029

0.0021

0.7081

0.004985 (0.005414)

0.004086 (0.004694)

0.002727 (0.003496)

83509

111900

Queen

SRR039815

0.0024

0.0018

0.7273

0.004009 (0.005750)

0.003044 (0.005472)

0.00232 (0.003872)

98769

117829

Forager

SRR445767

0.0012

0.0015

0.6669

0.003271 (0.007931)

0.002662 (0.009665)

0.001867 (0.006780)

97220

106204

 

SRR445768

0.0013

0.0015

0.6479

0.003309 (0.008171)

0.002799 (0.01032)

0.001907 (0.007033)

101628

108382

 

SRR445769

0.0011

0.0014

0.6608

0.0032 (0.007830)

0.002730 (0.009752)

0.001897 (0.006778)

96934

105128

 

SRR445770

0.0012

0.0014

0.6461

0.00322 (0.008059)

0.002823 (0.01033)

0.001918 (0.007019)

100173

107755

 

SRR445771

0.0012

0.0014

0.6682

0.003269 (0.008434)

0.002803 (0.01055)

0.001970 (0.007415)

107688

111434

 

SRR445773

0.0013

0.0014

0.6574

0.003087 (0.007448)

0.002572 (0.009221)

0.001778 (0.006375)

117971

116825

Nurse

SRR445774

0.0012

0.0015

0.6888

0.003115 (0.007391)

0.002350 (0.008571)

0.001702 (0.006201)

75340

95191

 

SRR445775

0.0011

0.0015

0.6539

0.003209 (0.007849)

0.002620 (0.009733)

0.001801 (0.006693)

103257

109181

 

SRR445776

0.0012

0.0015

0.6506

0.003113 (0.007717)

0.002485 (0.009579)

0.001700 (0.006554)

92131

103492

 

SRR445777

0.0011

0.0015

0.6571

0.003228 (0.007936)

0.002636 (0.009818)

0.001821 (0.006785)

105435

110196

 

SRR445778

0.0013

0.0013

0.6563

0.003252 (0.008262)

0.002980 (0.01063)

0.002057 (0.007338)

63375

90489

 

SRR445799

0.0012

0.0015

0.6574

0.003314 (0.008137)

0.002766 (0.01012)

0.001912 (0.006997)

99063

106836

Human (Brain)

 

HS1570_0731

0.0013

0.01

0.94

(0.8064)

(0.8563)

(0.8472)

901228a

882351a

  1. aCalling only on 106 CpGs in Chr 10.