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Table 2 Genomic distribution of the sense PACs in M. truncatula and Arabidopsis

From: Genome-wide determination of poly(A) sites in Medicago truncatula: evolutionary conservation of alternative poly(A) site choice

Region

M. truncatula

Arabidopsis

PAC#

PAC%

PAT#

PAT%

PAC#

PAC%

PAT#

PAT%

3′-UTR1

26915

63.2

1724860

84.20

34189

64.2

2193391

94.0

5′-UTR

34

0.08

142

0.01

185

0.35

6431

0.28

AMB2

3104

7.29

179244

8.75

2532

4.75

83859

3.59

CDS

4470

10.5

29468

1.44

3759

7.05

10899

0.47

Intergenic

4843

11.3

69888

3.41

7233

13.6

21142

0.91

Promoter3

724

1.70

5130

0.25

2994

5.62

10000

0.43

Intron

2501

5.87

39787

1.94

2296

4.31

6711

0.29

Pseudogenic_exon4

-

-

-

-

101

0.19

1192

0.05

Exon4

-

-

-

-

398

0.75

2771

0.12

Total

42591

100

2048519

100

53289

100

2333625

100

  1. 1The 3′-UTR region is the extended region as defined in the text.
  2. 2AMB: Ambiguously mapped at regions that have different annotations due to alternative transcription or RNA processing.
  3. 3The promoter region is defined as the region 2000 upstream from the 5′-UTR.
  4. 4In the annotation file of M. truncatula, there are no pseudogenic_exon and exon annotations.
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BMC Genomics

ISSN: 1471-2164

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