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Table 2 Genomic distribution of the sense PACs in M. truncatula and Arabidopsis

From: Genome-wide determination of poly(A) sites in Medicago truncatula: evolutionary conservation of alternative poly(A) site choice

Region M. truncatula Arabidopsis
PAC# PAC% PAT# PAT% PAC# PAC% PAT# PAT%
3′-UTR1 26915 63.2 1724860 84.20 34189 64.2 2193391 94.0
5′-UTR 34 0.08 142 0.01 185 0.35 6431 0.28
AMB2 3104 7.29 179244 8.75 2532 4.75 83859 3.59
CDS 4470 10.5 29468 1.44 3759 7.05 10899 0.47
Intergenic 4843 11.3 69888 3.41 7233 13.6 21142 0.91
Promoter3 724 1.70 5130 0.25 2994 5.62 10000 0.43
Intron 2501 5.87 39787 1.94 2296 4.31 6711 0.29
Pseudogenic_exon4 - - - - 101 0.19 1192 0.05
Exon4 - - - - 398 0.75 2771 0.12
Total 42591 100 2048519 100 53289 100 2333625 100
  1. 1The 3′-UTR region is the extended region as defined in the text.
  2. 2AMB: Ambiguously mapped at regions that have different annotations due to alternative transcription or RNA processing.
  3. 3The promoter region is defined as the region 2000 upstream from the 5′-UTR.
  4. 4In the annotation file of M. truncatula, there are no pseudogenic_exon and exon annotations.