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Figure 4 | BMC Genomics

Figure 4

From: Metabolic pathways for the whole community

Figure 4

Analysis of predicted pathways from the Hawaii Ocean Time-series. (a) A total of 1033 unique pathways were predicted from the HOT samples (Additional file 3), however only 840 unique pathways remained after all pathways in each sample with less than 10 ORFs were removed (Additional file 4). (b) After normalizing by total predicted ORFs (Additional files 5 and 6), a 4-way set analysis of these quality controlled (QC) pathways shows that the samples share a large core of common pathways. (c) Separating unique pathways within the DNA and RNA of each sample revealed that very few pathways were unique to the RNA fraction of each sample. (d) Finally, at set analysis of the unique DNA fraction (light colors), and pathways common to DNA and RNA from each sample (dark colors) found subsets of pathways unique to each fraction (Additional files 7 and 8).

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