Table 1 LTR retroelements detected in the genome of Silurana tropicalis
From: LTR retroelements are intrinsic components of transcriptional networks in frogs
Family | Type | GSM1 (genomic ORFs) | GSM2 (LTR-harvest) | AAE | AEL [bp] | [%] |
|---|---|---|---|---|---|---|
Bel/Pao | Kobel | 129 | 140 | 135 | 7000 | 0.06468 |
Hydra3.1 | 0 | 2 | 1 | 7000 | 0.00048 | |
Ty1/Copia | Hydra1.1 | 6 | 8 | 7 | 4000 | 0.00192 |
Mtanga | 8 | 8 | 8 | 4000 | 0.00220 | |
Ty3/Gypsy | Amn-san | 749 | 805 | 777 | 5000 | 0.26688 |
Cer | 30 | 25 | 28 | 7000 | 0.01322 | |
Gmr | 177 | 215 | 196 | 8000 | 0.10772 | |
Mag | 65 | 102 | 84 | 4000 | 0.02294 | |
Retroviridae | MuERV | 2 | 1 | 2 | 6000 | 0.00062 |
SnRV | 7 | 11 | 9 | 10000 | 0.00618 | |
XEN1 | 7 | 12 | 10 | 10000 | 0.00653 | |
Total | 1180 | 1329 | 1257 | 0.49337 | ||