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Table 1 LTR retroelements detected in the genome of Silurana tropicalis

From: LTR retroelements are intrinsic components of transcriptional networks in frogs

Family Type GSM1 (genomic ORFs) GSM2 (LTR-harvest) AAE AEL [bp] [%]
Bel/Pao Kobel 129 140 135 7000 0.06468
Hydra3.1 0 2 1 7000 0.00048
Ty1/Copia Hydra1.1 6 8 7 4000 0.00192
Mtanga 8 8 8 4000 0.00220
Ty3/Gypsy Amn-san 749 805 777 5000 0.26688
Cer 30 25 28 7000 0.01322
Gmr 177 215 196 8000 0.10772
Mag 65 102 84 4000 0.02294
Retroviridae MuERV 2 1 2 6000 0.00062
SnRV 7 11 9 10000 0.00618
XEN1 7 12 10 10000 0.00653
Total 1180 1329 1257   0.49337
  1. Based on the results of two genome search methods (GSM1 and 2) the average amount of elements (AAE), the average element length (AEL), and the percentage [%] of the elements in the genome were calculated.