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Table 2 Genome-wide analysis of C. lunata CX-3 gene sets

From: Genome sequence and virulence variation-related transcriptome profiles of Curvularia lunata, an important maize pathogenic fungus

Characteristics CX-3 CCC corea CX-3-m118 specificb CX-3-C5 specificc CX-3 specific
Protein-encoding genes 11234 10082 293 332 527
Protein families 2830 2780 71 66 48
Secreted proteins 840 736 41 23 40
PHI genesd 1904 1880 2 10 12
Transposases 161 78 5 34 44
Proteases 516 502 5 4 5
Glycoside hydrolases 219 216 0 1 2
MFS transporters 252 252 0 0 0
ABC transporters 47 47 0 0 0
P450s 147 147 0 0 0
GPCRs 129 128 1 0 0
Pth11-like GPCRs 37 0 0 0 0
Protein kinases 153 153 0 0 0
Fungal specific transcription factors 222 209 9 2 2
Backbone genes for secondary metabolism 34 34 0 0 0
Orthologs in C. lunata m118 10375 10082 293 NA NA
Orthologs in B. maydis C5 10414 10082 NA 332 NA
Orthologs in S. turcica 10268 9833 125 238 72
Orthologs in P. tritici-repentis 9979 9656 111 144 68
Orthologs in M. oryzae 8462 8320 56 62 24
Identity to C. lunata m118 orthologs 85.9% 86.4% 68.8% NA NA
Identity to B. maydis C5 orthologs 78.6% 79.1% NA 64.2% NA
Identity to S. turcica orthologs 75.8% 76.5% 53.3% 62.7% 57.2%
Identity to P. tritici-repentis orthologs 70.9% 71.6% 50.4% 52.8% 47.0%
Identity to M. oryzae orthologs 47.9% 48.0% 38.4% 39.3% 36.9%
  1. CX-3: C. lunata CX-3. aCCC core: C. lunata CX-3, C. lunata m118 and B. maydis C5 genes grouped with a cutoff E value of 1e-5 during reciprocal Blast analysis. bCX-3-m118 specific: C. lunata CX-3 and C. lunata m118 specific genes in relative to B. maydis C5 grouped with a cutoff E value of 1e-5. cCX-3-C5 specific: C. lunata CX-3 and B. maydis C5 specific genes in relative to C. lunata m118 grouped with a cutoff E value of 1e-5. dPHI genes, pathogen-host interaction genes identified by Blast analysis against the PHI database with a cutoff E value of 1e-5. Identity was estimated using amino acid sequences. GPCR, G-protein-coupled receptor; MFS, major facilitator superfamily; NA, not available. B. maydis = C. heterostrophus.