Skip to main content

Table 1 qPCR validation of selected transcripts exhibiting differential accumulation in microarray

From: Differential gene expression and metabolomic analyses of Brachypodium distachyon infected by deoxynivalenol producing and non-producing strains of Fusarium graminearum

  

Microarray

 

qPCR

  

Gene

Comparison

Fold change (Log2)

P-val (Bonferroni)

Fold change (Log2)

Standard error

Gene description

Bradi1g75310

Fg don+ vs Tween

6.93

0.00

14.40

0.26

Cytochrome P450 monooxygenase

 

Fg don- vs Tween

0.77

1.00

6.28

0.40

 
 

Fg don+ vs Fg don-

6.16

0.00

8.12

0.26

 

Bradi3g22880

Fg don+ vs Tween

7.44

0.00

10.24

0.08

MATE efflux

 

Fg don- vs Tween

1.36

0.18

2.26

0.11

 
 

Fg don+ vs Fg don-

6.08

0.00

7.97

0.08

 

Bradi2g41010

Fg don+ vs Tween

9.30

0.00

12.93

0.15

Unknown

 

Fg don- vs Tween

4.80

0.00

3.84

0.25

 
 

Fg don+ vs Fg don-

4.51

0.00

9.08

0.15

 

Bradi2g35930

Fg don+ vs Tween

8.19

0.00

10.09

0.07

Glutathione S-transferase GSTF1-like

 

Fg don- vs Tween

4.15

0.00

3.46

0.45

 
 

Fg don+ vs Fg don-

4.05

0.00

6.63

0.07

 

Bradi4g39950

Fg don+ vs Tween

2.38

0.00

3.12

0.19

NADP-dependent alkenal double bond reductase P1

 

Fg don- vs Tween

5.68

0.00

6.05

0.28

 
 

Fg don+ vs Fg don-

-3.29

0.00

-2.93

0.19

 

Bradi4g05040

Fg don+ vs Tween

2.25

0.00

3.35

0.06

PR10

 

Fg don- vs Tween

7.48

0.00

8.42

0.27

 
 

Fg don+ vs Fg don-

-5.22

0.00

-5.08

0.06

 

Bradi4g36870

Fg don+ vs Tween

3.69

0.00

4.75

0.05

Ornithine decarboxylase

 

Fg don- vs Tween

0.90

1.00

1.59

0.50

 
 

Fg don+ vs Fg don-

2.77

0.00

3.16

0.05

 

Bradi4g36810

Fg don+ vs Tween

5.06

0.00

10.14

0.28

Ornithine decarboxylase

 

Fg don- vs Tween

1.37

0.15

5.55

0.26

 
 

Fg don+ vs Fg don-

3.69

0.00

4.59

0.28

 

Bradi1g50067

Fg don+ vs Tween

3.63

0.00

5.23

0.16

Arginine decarboxylase

 

Fg don- vs Tween

1.16

1.00

1.58

0.31

 
 

Fg don+ vs Fg don-

2.46

0.00

3.65

0.16

 

Bradi3g47110

Fg don+ vs Tween

5.86

0.00

11.99

0.34

Phenylalanine ammonia-lyase

 

Fg don- vs Tween

0.32

1.00

5.59

0.59

 
 

Fg don+ vs Fg don-

5.53

0.00

6.41

0.34

 

Bradi3g53227

Fg don+ vs Tween

3.56

0.00

6.94

0.14

3-hydroxy-3-methyl-glutaryl-CoA reductase

 

Fg don- vs Tween

0.17

1.00

1.77

0.15

 
 

Fg don+ vs Fg don-

3.40

0.00

5.17

0.14

 

Bradi2g13360

Fg don+ vs Tween

4.10

0.00

5.69

0.14

Mevalonate kinase

 

Fg don- vs Tween

1.93

0.00

2.26

0.36

 
 

Fg don+ vs Fg don-

2.17

0.00

3.43

0.14

 

Bradi5g02780

Fg don+ vs Tween

2.41

0.00

4.87

0.16

UDP-glycosyltransferase

 

Fg don- vs Tween

1.16

1.00

2.66

0.36

 
 

Fg don+ vs Fg don-

1.25

1.00

2.21

0.16

 

Bradi5g03300

Fg don+ vs Tween

7.46

0.00

12.01

0.16

UDP-glycosyltransferase

 

Fg don- vs Tween

0.88

1.00

2.92

0.47

 
 

Fg don+ vs Fg don-

6.59

0.00

9.08

0.16

 

Bradi5g03370

Fg don+ vs Tween

6.61

0.00

9.51

0.19

UDP-glycosyltransferase

 

Fg don- vs Tween

2.09

0.00

3.29

0.44

 
 

Fg don+ vs Fg don-

4.52

0.00

6.22

0.19

 

Bradi5g03380

Fg don+ vs Tween

6.72

0.00

12.46

0.22

UDP-glycosyltransferase

 

Fg don- vs Tween

1.52

0.01

4.36

0.73

 
 

Fg don+ vs Fg don-

5.20

0.00

8.10

0.22

 

Bradi5g03390

Fg don+ vs Tween

4.34

0.00

6.23

0.08

UDP-glycosyltransferase

 

Fg don- vs Tween

1.86

0.00

2.15

0.44

 
 

Fg don+ vs Fg don-

2.49

0.00

4.08

0.08

 

Bradi5g03400

Fg don+ vs Tween

1.22

1.00

2.51

0.13

UDP-glycosyltransferase

 

Fg don- vs Tween

1.37

0.14

2.01

0.10

 
 

Fg don+ vs Fg don-

-0.16

1.00

0.50

0.13

 

Bradi2g04720

Fg don+ vs Tween

5.41

0.00

8.76

0.20

UDP-glycosyltransferase

 

Fg don- vs Tween

3.22

0.00

5.47

0.24

 
 

Fg don+ vs Fg don-

2.19

0.00

3.29

0.20

 

Bradi2g04760

Fg don+ vs Tween

4.71

0.00

7.25

0.19

UDP-glycosyltransferase

 

Fg don- vs Tween

1.04

1.00

2.57

0.26

 
 

Fg don+ vs Fg don-

3.67

0.00

4.68

0.19

Â