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Table 4 miRNAs and siRNAs cleavage sites detected by 5′RACE

From: Endogenous small-noncoding RNAs and their roles in chilling response and stress acclimation in Cassava

Genes

Condition

Basepair

Target ID

 

Annotation

miR390-TAS3c binding site #1

CA + CCA

1(1)

scaffold05214

TAS3c

Non-coding gene, the inter-space between NO.1 and NO.2 basepair match is 168 bp.

CS

11(2), 1(6), 0(1)

miR390-TAS3c binding site #2

CA + CCA

5(1)

CS

5(1)

miR167-ARF8

CA + CCA

9(1), 7(1)

001923 m

ARF8

auxin response factor 8

miR393-ABF3

NC

10(1), 17(1)

004520 m

AFB3

auxin signaling F-box 3

CA + CCA

11(8)

CS

11(7)

tasiAFR3-ARF3

CA + CCA

11(1)

002399 m

ETT/ARF3

Transcriptional factor B3 family protein/auxin-responsive factor AUX/IAA-related

CS

11(6)

tasiARF1-ARF3

CS

11(1)

002399 m

ETT/ARF3

tasiARF1-ARF4

CA + CCA

10(1)

001979 m

ARF4

auxin response factor 4

CS

10(1)

tasiARF2-NAC2

CS

11(2)

027253 m

NAC2

NAC domain containing protein 2

siReport31-CUL4

CA + CCA

18(1)

001768 m

CUL4

cullin4

  1. Each target site was detected by ten clones. “Basepair” column lists the specific cleavage site from the 5′ end of a miRNA or siRNA and the number of clones (in parenthesis) that were detected to have cleavage products.