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Table 4 miRNAs and siRNAs cleavage sites detected by 5′RACE

From: Endogenous small-noncoding RNAs and their roles in chilling response and stress acclimation in Cassava

Genes Condition Basepair Target ID   Annotation
miR390-TAS3c binding site #1 CA + CCA 1(1) scaffold05214 TAS3c Non-coding gene, the inter-space between NO.1 and NO.2 basepair match is 168 bp.
CS 11(2), 1(6), 0(1)
miR390-TAS3c binding site #2 CA + CCA 5(1)
CS 5(1)
miR167-ARF8 CA + CCA 9(1), 7(1) 001923 m ARF8 auxin response factor 8
miR393-ABF3 NC 10(1), 17(1) 004520 m AFB3 auxin signaling F-box 3
CA + CCA 11(8)
CS 11(7)
tasiAFR3-ARF3 CA + CCA 11(1) 002399 m ETT/ARF3 Transcriptional factor B3 family protein/auxin-responsive factor AUX/IAA-related
CS 11(6)
tasiARF1-ARF3 CS 11(1) 002399 m ETT/ARF3
tasiARF1-ARF4 CA + CCA 10(1) 001979 m ARF4 auxin response factor 4
CS 10(1)
tasiARF2-NAC2 CS 11(2) 027253 m NAC2 NAC domain containing protein 2
siReport31-CUL4 CA + CCA 18(1) 001768 m CUL4 cullin4
  1. Each target site was detected by ten clones. “Basepair” column lists the specific cleavage site from the 5′ end of a miRNA or siRNA and the number of clones (in parenthesis) that were detected to have cleavage products.