In depth annotation of the Anopheles gambiae mosquito midgut transcriptome

BMC Genomics

Table 2 Distribution of Anopheles gambiae midgut lncRNA by Cufflinks class code

Transcript class codes	Amount	LncRNA	Percentage
GENIC
Complete match	5483	321	5.8
Novel isoform	4940	601	1.2
Within reference intron	2550	1616	63.3
Read mapping errors	15	10	66.7
Overlap	517	151	29.2
Pre-mRNA	470	219	46.6
Exonic overlap to opposite strand	131	90	68.7
Subtotal	14106	3008	21.3
INTERGENIC
Polymerase run-on	1821	1511	83.0
Unknown intergenic	5450	4335	79.5
Repeat	707	377	53.3
Multiple classifications	805	632	78.5
Subtotal	8783	6855	78.05
TOTAL	22889	9863	43.1

Number of An. gambiae midgut long non-coding RNA (lncRNA) by Cufflinks class codes and as a percentage of the class code transcript total.

ISSN: 1471-2164