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Table 2 The 11 SNP core haplotype shown by Sweep (v1.1) to be in LD in region 2 (Table 1 ) on chromosome 1

From: Signatures of selection in sheep bred for resistance or susceptibility to gastrointestinal nematodes

SNP ID Chr Position Platform SNP Haplotype
     (Derived/ancestral) 1 2 3 4 5 6 7 8
OAR1_93117979 1 87702641 Sequenom® T/C C C C C C C C T
OAR1_93118073 1 87702735 Sequenom® C/T T T T T T T T C
OAR1_93124341.1 1 87709264 SNP50 BeadChip T/C C C C C C T T T
OAR1_93154178 1 87740396 Sequenom® A/G A G G G G A G A
s50853 1 87751371 Sequenom® G/C G C C G G C C C
OAR1_93166689.1 1 87753155 SNP50 BeadChip G/T T T T T T T T G
OAR1_93219257.1 1 87791568 SNP50 BeadChip C/T C C C C C C C T
OAR1_93226648 1 87801889 Sequenom® A/G G G G G G G G A
OAR1_93231706 1 87807624 Sequenom® G/T T T T G T T T T
OAR1_93231813 1 87807731 Sequenom® T/C T T T C T C T T
s57213.1 1 87826285 SNP50 BeadChip C/T C C T C T C C T
OAR1_93251748 1 87828912 Sequenom® A/G - - - - - - - -
     Selection line Haplotype frequency
     Romney resistant - - - 0.3211 - - - 0.6789
     Romney susceptible - - - 0.8841 - - - 0.0976
     Perendale resistant 0.0203 - 0.0203 0.6554 0.0338 0.0203 0.0405 -
     Perendale susceptible - 0.0278 - 0.3264 0.0764 - - 0.5417
  1. Haplotypes 1–8 were present in either the Romney or Perendale animals, or both. Haplotype frequencies are given for each selection line.