Skip to main content

Table 1 In silico analysis of LIM genes collected from the Brassica database a

From: Identification and characterization of LIM gene family in Brassica rapa

Name of genes Accession number ORF (bp) Located chromosome number Protein
Length (aa) LIM domain Start - end (aa) Mol.Wt. (KD) pI
BrLIM1 Bra014447 636 A04 211 9-61 and 105-157 23.62 6.2
BrLIM2 Bra007586 654 A09 217 9-61 and 104-156 24.24 5.83
BrLIM3 Bra033233 618 A10 205 9-61 and 103-155 22.87 7.12
BrLIM4 Bra032650 618 A09 205 9-61 and 103-155 22.92 6.77
BrLIM5 Bra007189 606 A09 201 10-62 and 109-161 21.88 9.09
BrLIM6 Bra026940 279 A09 92 10-62 10.36 8.93
BrLIM7 KJ686594b 603 A04 200 10-62 and 108-160 21.88 9.16
Bra014721c
BrLIM8 Bra005003 600 A05 199 9-61 and 108-160 21.83 8.92
BrLIM9 KJ686594b 603 A03 200 9-61 and 108-160 21.92 8.92
Bra000154c
BrLIM10 Bra019956 573 A06 190 9-61 and 109-161 21.06 9.11
BrLIM11 Bra018454 570 A05 189 9-61 and 109-161 20.98 9.02
BrLIM12 Bra037160 1173 A09 390 38-93 44.26 5.68
BrLIM13 Bra037159 1551 A09 516 147-209 59.32 6.10
BrLIM14 Bra016514 1389 A08 462 102-154 53.23 6.34
BrLIM15 d Bra025725 1584 A06 527 166-218 59.68 5.89
BrLIM16 d Bra011712 1797 A01 598 230-282 68.09 5.30
BrLIM17 Bra005011 1506 A05 501 160-224 56.31 8.19
BrLIM18 Bra000152 1545 A03 514 146-198 57.99 7.30
BrLIM19 e Bra012087 3948 A07 1315 471-526 150.61 5.28
BrLIM20 Bra000404 681 A03 226 9-61 and 103-155 24.93 6.31
BrLIM21 Bra039313 690 A04 229 9-61 and 105-157 25.13 6.04
BrLIM22 Bra004939 690 A05 229 9-61 and 105-157 25.03 6.12
  1. aBrassica database (http://brassicadb.org/brad/index.php), bGenbank accession number, cBrassica database accession number, dAdditional 2 UIM domain and eAdditional 4 UIM domain.