Identification and characterization of LIM gene family in Brassica rapa

BMC Genomics

Table 1 In silico analysis of LIM genes collected from the Brassica database ^a

Name of genes	Accession number	ORF (bp)	Located chromosome number	Protein
Name of genes	Accession number	ORF (bp)	Located chromosome number	Length (aa)	LIM domain Start - end (aa)	Mol.Wt. (KD)	pI
BrLIM1	Bra014447	636	A04	211	9-61 and 105-157	23.62	6.2
BrLIM2	Bra007586	654	A09	217	9-61 and 104-156	24.24	5.83
BrLIM3	Bra033233	618	A10	205	9-61 and 103-155	22.87	7.12
BrLIM4	Bra032650	618	A09	205	9-61 and 103-155	22.92	6.77
BrLIM5	Bra007189	606	A09	201	10-62 and 109-161	21.88	9.09
BrLIM6	Bra026940	279	A09	92	10-62	10.36	8.93
BrLIM7	KJ686594^b	603	A04	200	10-62 and 108-160	21.88	9.16
BrLIM7	Bra014721^c	603	A04	200	10-62 and 108-160	21.88	9.16
BrLIM8	Bra005003	600	A05	199	9-61 and 108-160	21.83	8.92
BrLIM9	KJ686594^b	603	A03	200	9-61 and 108-160	21.92	8.92
BrLIM9	Bra000154^c	603	A03	200	9-61 and 108-160	21.92	8.92
BrLIM10	Bra019956	573	A06	190	9-61 and 109-161	21.06	9.11
BrLIM11	Bra018454	570	A05	189	9-61 and 109-161	20.98	9.02
BrLIM12	Bra037160	1173	A09	390	38-93	44.26	5.68
BrLIM13	Bra037159	1551	A09	516	147-209	59.32	6.10
BrLIM14	Bra016514	1389	A08	462	102-154	53.23	6.34
BrLIM15 ^d	Bra025725	1584	A06	527	166-218	59.68	5.89
BrLIM16 ^d	Bra011712	1797	A01	598	230-282	68.09	5.30
BrLIM17	Bra005011	1506	A05	501	160-224	56.31	8.19
BrLIM18	Bra000152	1545	A03	514	146-198	57.99	7.30
BrLIM19 ^e	Bra012087	3948	A07	1315	471-526	150.61	5.28
BrLIM20	Bra000404	681	A03	226	9-61 and 103-155	24.93	6.31
BrLIM21	Bra039313	690	A04	229	9-61 and 105-157	25.13	6.04
BrLIM22	Bra004939	690	A05	229	9-61 and 105-157	25.03	6.12

^aBrassica database (http://brassicadb.org/brad/index.php), ^bGenbank accession number, ^cBrassica database accession number, ^dAdditional 2 UIM domain and ^eAdditional 4 UIM domain.

ISSN: 1471-2164