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Table 2 Homology analysis of LIM and DA1-related ( DAR ) genes of Brassica rapa a

From: Identification and characterization of LIM gene family in Brassica rapa

Name of genes New given name Top matched LIM clones Name of proteins Identity (%) E value Homologous species References
BrLIM1 BrPLIM2a NP182104 PLIM2a 77 6e-113 Arabidopsis thaliana [32]
ACB05475 LIM protein 2b 68 1e-105 Nicotiana tabacum [33]
BrLIM2 BrPLIM2b NP182104 PLIM2a 87 2e-112 A. thaliana [32]
ABK58466 PLIM2a 80 6e-106 Populus tremula x Populus alba Unpublished
BrLIM3 BrPLIM2c XP002892043 LIM protein 95 7e-144 Arabidopsis lyrata subsp. lyrata Unpublished
ABK58466 PLIM2a 74 2e-99 P. tremula x Populus alba Unpublished
BrLIM4 BrPLIM2d NP182104 PLIM2a 72 1e-99 A. thaliana [32]
XP002892043 LIM protein 92 2e-143 A. lyrata subsp. lyrata Unpublished
BrLIM5 BrWLIM2a XP002879831 LIM protein 88 2e-119 A. lyrata subsp. lyrata Unpublished
WLIM2a LIM protein 87 4e-118 A. thaliana [32]
BrLIM6 BrWLIM2b XP002876333 LIM protein 91 8e-52 A. lyrata subsp. lyrata Unpublished
AAD56951 WLIM2 83 3e-47 N. tabacum Unpublished
BrLIM7 BrWLIM2c XP002876333 LIM protein 93 3e-122 A. lyrata subsp. lyrata Unpublished
ABK58469 WLIM2a 84 1e-111 P. tremula x Populus alba Unpublished
BrLIM8 BrWLIM2d NP181519 WLIM2a 93 6e-124 A. thaliana [32]
ACX47456 LIM1 84 2e-113 Hevea brasiliensis Unpublished
BrLIM9 BrWLIM2e XP002879831 LIM protein 91 1e-125 A. lyrata subsp. lyrata Unpublished
ABK58469 WLIM2a 81 4e-114 P. tremula x Populus alba Unpublished
BrLIM10 BrWLIM1a NP172491 WLIM1 99 1e-137 A. thaliana [34]
ABB51614 LIM protein 97 6e-133 Brassica napus Unpublished
BrLIM11 BrWLIM1b ABB51614 LIM protein 99 6e-137 B. napus Unpublished
NP172491 WLIM1 98 6e-134 A. thaliana [34]
BrLIM12 BrDAR1 AED98240 DAR6 protein 67 0.0 A. thaliana [35]
AED98241 DAR5 protein 64 5e-160 A. thaliana [35]
BrLIM13 BrDAR2 AED98243 DAR3 protein 65 0.0 A. thaliana [35]
XP003611877 LIM and UIM domain-containing 43 2e-106 Medicago truncatula Unpublished
BrLIM14 BrDAR3 NP173361 DA1 protein 71 0.0 A. thaliana [34]
EOY14670 LIM and UIM domain-containing 65 0.0 Theobroma cacao Unpublished
BrLIM15 BrDAR4 NP173361 DA1 protein 87 0.0 A. thaliana [34]
EOY14670 LIM and UIM domain-containing 66 0.0 T. cacao Unpublished
BrLIM16 BrDAR5 NP195404 DAR1 89 0.0 A. thaliana [36]
XP003611877 LIM and UIM domain-containing 64 0.0 M. truncatula Unpublished
BrLIM17 BrDAR6 NP181513 DAR2 86 0.0 A. thaliana [32]
XP003616507 LIM and UIM domain-containing 61 0.0 M. truncatula Unpublished
BrLIM18 BrDAR7 NP181513 DAR2 89 0.0 A. thaliana [32]
XP003616507 LIM and UIM domain-containing 66 0.0 M. truncatula Unpublished
BrLIM19 BrDAR8 AED98240 DAR6 protein 57 1e-136 A. thaliana [35]
NP195404 DAR1 42 2e-51 A. thaliana [36]
BrLIM20 BrPLIM2e NP182104 PLIM2a 83 9e-121 A. thaliana [32]
AAF75828 PLIM2 70 2e-84 N. tabacum Unpublished
BrLIM21 BrPLIM2f XP002882034 LIM protein 86 1e-141 A. lyrata subsp. lyrata Unpublished
NP182104 PLIM2a 86 5e-132 A. thaliana [32]
BrLIM22 BrPLIM2g NP182104 PLIM2a 88 6e-133 A. thaliana [32]
ABK58466 PLIM2a 77 2e-99 P. tremula x Populus alba Unpublished
  1. aAnalyzed using BLAST from NCBI, http://www.ncbi.nlm.nih.gov/BLAST/.