Table 2 Homology analysis of LIM and DA1-related ( DAR ) genes of Brassica rapa a
From: Identification and characterization of LIM gene family in Brassica rapa
Name of genes | New given name | Top matched LIM clones | Name of proteins | Identity (%) | E value | Homologous species | References |
|---|---|---|---|---|---|---|---|
BrLIM1 | BrPLIM2a | NP182104 | PLIM2a | 77 | 6e-113 | Arabidopsis thaliana | [32] |
ACB05475 | LIM protein 2b | 68 | 1e-105 | Nicotiana tabacum | [33] | ||
BrLIM2 | BrPLIM2b | NP182104 | PLIM2a | 87 | 2e-112 | A. thaliana | [32] |
ABK58466 | PLIM2a | 80 | 6e-106 | Populus tremula x Populus alba | Unpublished | ||
BrLIM3 | BrPLIM2c | XP002892043 | LIM protein | 95 | 7e-144 | Arabidopsis lyrata subsp. lyrata | Unpublished |
ABK58466 | PLIM2a | 74 | 2e-99 | P. tremula x Populus alba | Unpublished | ||
BrLIM4 | BrPLIM2d | NP182104 | PLIM2a | 72 | 1e-99 | A. thaliana | [32] |
XP002892043 | LIM protein | 92 | 2e-143 | A. lyrata subsp. lyrata | Unpublished | ||
BrLIM5 | BrWLIM2a | XP002879831 | LIM protein | 88 | 2e-119 | A. lyrata subsp. lyrata | Unpublished |
WLIM2a | LIM protein | 87 | 4e-118 | A. thaliana | [32] | ||
BrLIM6 | BrWLIM2b | XP002876333 | LIM protein | 91 | 8e-52 | A. lyrata subsp. lyrata | Unpublished |
AAD56951 | WLIM2 | 83 | 3e-47 | N. tabacum | Unpublished | ||
BrLIM7 | BrWLIM2c | XP002876333 | LIM protein | 93 | 3e-122 | A. lyrata subsp. lyrata | Unpublished |
ABK58469 | WLIM2a | 84 | 1e-111 | P. tremula x Populus alba | Unpublished | ||
BrLIM8 | BrWLIM2d | NP181519 | WLIM2a | 93 | 6e-124 | A. thaliana | [32] |
ACX47456 | LIM1 | 84 | 2e-113 | Hevea brasiliensis | Unpublished | ||
BrLIM9 | BrWLIM2e | XP002879831 | LIM protein | 91 | 1e-125 | A. lyrata subsp. lyrata | Unpublished |
ABK58469 | WLIM2a | 81 | 4e-114 | P. tremula x Populus alba | Unpublished | ||
BrLIM10 | BrWLIM1a | NP172491 | WLIM1 | 99 | 1e-137 | A. thaliana | [34] |
ABB51614 | LIM protein | 97 | 6e-133 | Brassica napus | Unpublished | ||
BrLIM11 | BrWLIM1b | ABB51614 | LIM protein | 99 | 6e-137 | B. napus | Unpublished |
NP172491 | WLIM1 | 98 | 6e-134 | A. thaliana | [34] | ||
BrLIM12 | BrDAR1 | AED98240 | DAR6 protein | 67 | 0.0 | A. thaliana | [35] |
AED98241 | DAR5 protein | 64 | 5e-160 | A. thaliana | [35] | ||
BrLIM13 | BrDAR2 | AED98243 | DAR3 protein | 65 | 0.0 | A. thaliana | [35] |
XP003611877 | LIM and UIM domain-containing | 43 | 2e-106 | Medicago truncatula | Unpublished | ||
BrLIM14 | BrDAR3 | NP173361 | DA1 protein | 71 | 0.0 | A. thaliana | [34] |
EOY14670 | LIM and UIM domain-containing | 65 | 0.0 | Theobroma cacao | Unpublished | ||
BrLIM15 | BrDAR4 | NP173361 | DA1 protein | 87 | 0.0 | A. thaliana | [34] |
EOY14670 | LIM and UIM domain-containing | 66 | 0.0 | T. cacao | Unpublished | ||
BrLIM16 | BrDAR5 | NP195404 | DAR1 | 89 | 0.0 | A. thaliana | [36] |
XP003611877 | LIM and UIM domain-containing | 64 | 0.0 | M. truncatula | Unpublished | ||
BrLIM17 | BrDAR6 | NP181513 | DAR2 | 86 | 0.0 | A. thaliana | [32] |
XP003616507 | LIM and UIM domain-containing | 61 | 0.0 | M. truncatula | Unpublished | ||
BrLIM18 | BrDAR7 | NP181513 | DAR2 | 89 | 0.0 | A. thaliana | [32] |
XP003616507 | LIM and UIM domain-containing | 66 | 0.0 | M. truncatula | Unpublished | ||
BrLIM19 | BrDAR8 | AED98240 | DAR6 protein | 57 | 1e-136 | A. thaliana | [35] |
NP195404 | DAR1 | 42 | 2e-51 | A. thaliana | [36] | ||
BrLIM20 | BrPLIM2e | NP182104 | PLIM2a | 83 | 9e-121 | A. thaliana | [32] |
AAF75828 | PLIM2 | 70 | 2e-84 | N. tabacum | Unpublished | ||
BrLIM21 | BrPLIM2f | XP002882034 | LIM protein | 86 | 1e-141 | A. lyrata subsp. lyrata | Unpublished |
NP182104 | PLIM2a | 86 | 5e-132 | A. thaliana | [32] | ||
BrLIM22 | BrPLIM2g | NP182104 | PLIM2a | 88 | 6e-133 | A. thaliana | [32] |
ABK58466 | PLIM2a | 77 | 2e-99 | P. tremula x Populus alba | Unpublished |