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Figure 1 | BMC Genomics

Figure 1

From: CodaChrome: a tool for the visualization of proteome conservation across all fully sequenced bacterial genomes

Figure 1

The CodaChrome GUI. Salmonella enterica 14028S was loaded as the seed organism. The rows were sorted by average proteome identity. The portion of the heat map visualized in the CodaChrome Graph Panel is indicated by the grey box in the Overview Panel. Lighter-than-normal vertical stripes represent large clusters of proteins unique to the seed organism. Dark vertical stripes represent clusters of highly conserved proteins. Buttons embedded in the control panel allow the user to interact with the visualization of the matrix file. A slider at the top of the control panel allows the user to zoom in or out. Replicon arrows and gene selection arrows indicate the alignment selected and described in the information display panel. Finally, the percent identity threshold slider allows users to filter alignments below a specified threshold. For this image, the threshold was set to 20%. The slider also functions as a legend indicating how percent identities are translated into color.

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