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Table 1 Information on 46 ABC transporters identified in the T. japonicus genome

From: Genome-wide identification of whole ATP-binding cassette (ABC) transporters in the intertidal copepod Tigriopus japonicus

Gene

Length (AA)

  Accession no.

Matched gene

Matched species

E-value

Real-time RT-PCR primer (5′ → 3′)

ABCA1

2428

KF906264

ABCA1 (XP003747270)

Metaseiulus occidentalis

0

F: CGGCAGGTCTTATGAGTTTC R: CATTGTAAGTTTGGATTTGGG

ABCA3 isoform X1

1541

KF906265

ABCA3 (EKC30762)

Crassostrea gigas

0

F: TGATTCTGTGCCCTACTACTTG R: GAGATGGGTGATTGGTGAAG

ABCA3 isoform X2

1808

KF906266

ABCA3 (XP001851801)

Culex quinquefasciatus

0

F: TAGTTATGACACGGAGGTTGC R: TGAATAGTTGGTATGAACAGGG

ABCA5

1781

KF906267

ABCA5 (XP001607492)

Nasonia vitripennis

0

F: GACAGCAATCAGATGGAGGA R: CTTTCTTCCATTCCTCTGATTC

ABCA13

3124

KF906268

ABCA13 (EFN62269)

Camponotus floridanus

0

F: AGGTTTGTCTGAGGATGCTG R: GTATTTTGGGTCAATGTGCC

ABCB1 (Full transporter)

1361

KF906269

ABCB1 (AFS49708)

Tigriopus japonicus

0

F: GTGATGATTATTCTCTTTGGTGAC R: ATTGATTGCTGGAGTGTCGT

ABCB6 (Half transporter)

827

KF906270

ABCB6 (XP003485185)

Bombus impatiens

0

F: CCTTATCAAATGCTTGGGTC R: AGAATCCAAGTTGAATACACCC

ABCB7 (Half transporter)

692

KF906271

ABCB7 (XP001813375)

Tribolium castaneum

0

F: AGCCTAAAGTCCAGAATAAAGTG R: CAAACTGAGTCCGTTCAAGATA

ABCB8 (Half transporter)

676

KF906272

ABCB8 (EKC24099)

Crassostrea gigas

0

F: TTATTCAAGGCTTTCCAGACA R: GAATGGTCGGATTTTTGAGTA

ABCB10 (Half transporter)

665

KF906273

ABCB10 (XP005102782)

Aplysia californica

0

F: ACTTCGGCAGGATTTATTTG R: GTTGCGTGTCTGATGAAAGTC

ABCC1 isoform X1

1493

KF906274

ABCC1 (XP003243122)

Acyrthosiphon pisum

0

F : ACGGGAAGTATCATCAATCG R: GATGACAATGAGGACGGATG

ABCC1 isoform X2

1515

KF906275

ABCC1 (XP001604021)

Nasonia vitripennis

0

F: TTATCCTTCCAGTTATTGACCTT R: AGCAGAGAGCACACACATAGG

ABCC1 isoform X3

1497

KF906276

ABCC1 (XP003426122)

Nasonia vitripennis

0

F: TCATACTCAGTTACTATCCTCTT R: AAGGTCAGCAAGGATGGATA

ABCC1 isoform X4

1513

KF906277

ABCC1 (XP005176239)

Musca domestica

0

F: GGGGAAACTGTGAATCTTATGT R: TAGGAAAGCCAAGGACAAGA

ABCC1 isoform X5

1509

KF906278

ABCC1 (XP001604021)

Nasonia vitripennis

0

F: GTGTCAATCGTAACATTCCGT R: GTTTTCACGAAGAGGAGGATT

ABCC1 isoform X6

1476

KF906279

ABCC1 (XP003243122)

Acyrthosiphon pisum

0

F: CAGTGCCACAGTTTCTACCAT R: ACAACTTCAGACTCTTCCGATAG

ABCC1 isoform X7

1533

KF906280

ABCC1 (XP001604021)

Nasonia vitripennis

0

F: TGATGAAGAGGCTATGATTGG R: AGAGGAGAAACGAGATAACGC

ABCC1 isoform X8

1436

KF906281

ABCC1 (XP006119649)

Pelodiscus sinensis

0

F: TCAAGAACAAGGACGAGAGG R: CTTCAATGTTTCGGTATCCC

ABCC1 isoform X9

1611

KF906282

ABCC1 (XP003426121)

Nasonia vitripennis

0

F: TCTCTTGGTTTACGGGTTTG R: GAAACACGAAGCGACTCATC

ABCC1 isoform X10

1523

KF906283

ABCC1 (XP001604021)

Nasonia vitripennis

0

F: CAACGAGAGTCCAAACGAAC R: GGAAACAAGTGGTGAAATCG

ABCC2 isoform X1

1346

KF906285

ABCC1 (XP004770550)

Mustela putorius furo

7E-116

F: AGTATTCTCTCTCCGCATTCTC R: TGCCAATAAGGAGAGTGTAATG

ABCC2 isoform X2

1380

KF906286

ABCC1 (XP004580304)

Ochotona princeps

0

F: ATTAGCCAGTAAGAAGTTGAAGG R: GTCGTTCCCAAACATTCATC

ABCC4

1386

KF906287

ABCC4 (XP002939329)

Xenopus tropicalis

0

F: AGTATTCCTAAGTTGGTTTGTGG R: ACGGATGATGAGTGAAGGTG

ABCC5

1422

KF906288

ABCC5 (XP005051248)

Ficedula albicollis

0

F: TCAACAACCCTACACTTCCTG R: GCAGACAAGAGCGATGATTT

ABCC7

1496

KF906289

ABCC7 (ELT97351)

Acromyrmex echinatior

0

F: CAAATGACCCTCAACGAACT R: AGATACCGATGGAGAAAAACC

ABCC9

1949

KF906290

ABCC9 (XP003698789)

Apis florea

4E-135

F: TTGGGTCTGTTATCATTCTGG R: ACGAGTTGAAGCAAGGTGAG

ABCC-like

1296

KF906284

ABCC1 (XP001341895)

Danio rerio

0

F: GAAAAACGATAAGGCTGGTG R: CTATCCCAACTTTCTGACCG

ABCD2

736

KF906291

ABCD2 (XP001943381)

Acyrthosiphon pisum

0

F: GATGACGAAGAGACGACAATG R: GTCGTTGAAGCCTTTCTATGA

ABCD4 isoform X1

603

KF906292

ABCD4 (XP004699087)

Echinops telfairi

4E-153

F: AATGGAACTGGTCTGATGTGA R: ACAAGGACAAGGCTGAAGTG

ABCD4 isoform X2

608

KF906293

ABCD4 (XP005021486)

Anas platyrhynchos

7E-169

F: ATCAGTTACTACACCTATTCGGC R: CACGGGCGACATAAGTAGTT

ABCE1

611

KF906294

ABCE1 (XP003690922)

Apis florea

0

F: ACGAACCCTCTGCTTATTTG R: GCTCCACGATAAAACCTGTC

ABCF1

820

KF906295

ABCF1 (XP004531105)

Ceratitis capitata

0

F: CGAGAGTGAAGATGAAGACCA R: ATTTCTTGCCTTTCTTGTCCT

ABCF2

642

KF906296

ABCF2 (XP003403104)

Bombus impatiens

0

F: GATTTGGAGGCTTGTGTCTG R: TCCAGATGAATGATGTTGCTAC

ABCF3

711

KF906297

ABCF3 (XP004923267)

Bombyx mori

0

F: AATGTTGCTCAAGAAGATGGA R: GGCTTTGGCATCTTTTTTAC

ABCG_125057

687

KF906298

ABCG (XP003489743)

Bombus impatiens

0

F: TTATCGGCACACTCACTCCT R: ACACTATCCACACGAGCCAT

ABCG_90506

659

KF906299

ABCG (EFX83517)

Daphnia pulex

0

F: GGAAACGGTAATGAATCTGG R: GGATTCTTGATAACAGATAACCAG

ABCG_75152

651

KF906300

ABCG (XP_003398687)

Bombus terrestris

0

F: GTTACTAAAGAACCTCTCATTGC R: CCTTCTTGATTATTTTCTTGTCC

ABCG_105304

656

KF906301

ABCG (NP001034521)

Tribolium castaneum

0

F: ATGTATTCACACGGGAGACG R: TACACAGCACGACAAATCCA

ABCG1

767

KF906302

ABCG1 (EGI70628)

Acromyrmex echinatior

0

F: TGAGACAAACTTGAAAGAGAAAC R: ACACCTTCGGAGTTGTATGC

ABCG5 isoform X1

656

KF906303

ABCG5 (XP003748075)

Metaseiulus occidentalis

1E-170

F: ATTACCAACATCTCTCAAACACC R: TCCACTTAGCGACCTCCTTA

ABCG5 isoform X2

822

KF906304

ABCG5 (XP003694147)

Apis florea

2E-141

F: CTATCCATCCACCAACTTACG R: CAAGGATAGTCAATGAAGGCA

ABCH_139282

768

KF906305

ABCH (EFX78467)

Daphnia pulex

0

F: TGAGAAAGTTGCCTCTGGTC R: GATGGCTTGAATGCTGTAGTC

ABCH_88708

788

KF906306

ABCH (EFX78468)

Daphnia pulex

0

F: CAAACACAGCCATCTCCTTC R: GTAGATGGCACCTTTTGGAA

ABCH_103004

778

KF906307

ABCH (EFX78468)

Daphnia pulex

0

F: GTTGTGTTTGGTGTTCCTCC R: TTGAGTGGCATCTTGTTGAGT

ABCH_55580

723

KF906308

ABCH (EFX78468)

Daphnia pulex

0

F: ATCTATCAACTGCCCACTGC R: TTCCCATCTCCTCAGTGTTG

ABCH_68644

714

KF906309

ABCH (EFX71377)

Daphnia pulex

4E-88

F: TCCTCGGTTATTGATTCTCG R: CAAATAGTGTGTGGTGATGAGG