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Table 4 SNP discovery filters

From: The sex-specific transcriptome of the hermaphrodite sparid sharpsnout seabream (Diplodus puntazzo)

Filtering summary
Criteria SNPs Loci
Overall 354323 79898
Delete clusters 308353 78721
Quality > 25 244875 53911
Coverage > 15 149232 36829
Read allele ratio > 0.2 96942 30291
1 transcript per locus 85189 30291
  1. In each step the remaining SNPs and the corresponding loci are shown.