Table 4 SNP discovery filters
From: The sex-specific transcriptome of the hermaphrodite sparid sharpsnout seabream (Diplodus puntazzo)
Filtering summary | ||
|---|---|---|
Criteria | SNPs | Loci |
Overall | 354323 | 79898 |
Delete clusters | 308353 | 78721 |
Quality > 25 | 244875 | 53911 |
Coverage > 15 | 149232 | 36829 |
Read allele ratio > 0.2 | 96942 | 30291 |
1 transcript per locus | 85189 | 30291 |