Large-scale analysis of differential gene expression in coffee genotypes resistant and susceptible to leaf miner–toward the identification of candidate genes for marker assisted-selection

Cardoso, Danielle C; Martinati, Juliana C; Giachetto, Poliana F; Vidal, Ramon O; Carazzolle, Marcelo F; Padilha, Lilian; Guerreiro-Filho, Oliveiro; Maluf, Mirian P

doi:10.1186/1471-2164-15-66

Table 3 List of up-regulated genes observed for the T0R_T0S interaction with respective annotation and fold-change values

From: Large-scale analysis of differential gene expression in coffee genotypes resistant and susceptible to leaf miner–toward the identification of candidate genes for marker assisted-selection

Name	Blast Sol network genomics	e-value	Annotation*	Fold change (T0R X T0S)
0U1	SGN-E628893	0	---NA---	1000,27
0U2	SGN-E1352064	5e^-89	Caffeine synthase	642,35
0U3	SGN-E1326397	0	Acidic endochitinase se2	447,45
0U4	SGN-E1310344	0	Metallothionein-like protein	280,91
0U5	SGN-E1334735	0	Kunitz trypsin inhibitor	238,17
0U6	SGN-E1316291	0	Acid phosphatase	236,53
0U7	SGN-E661231	1e^-175	Polygalacturonase-1 non-catalytic subunit beta	236,37
0U8	SGN-E1327615	0	Kunitz trypsin inhibitor	168,12
0U9	SGN-E1337775	0	Organ-specific protein	155,92
0U10	SGN-E659257	0	Polygalacturonase-1 non-catalytic subunit beta	152,17
0U11	SGN-E1352070	0	Caffeine synthase	148,75
0U12	SGN-E642649	0	Cytokinin oxidase	143,25
0U13	SGN-E833713	1e^-146	Asr1 protein	119,38
0U14	SGN-E667484	0	Protein	115,77
0U15	SGN-E1319644	0	pr-10 type pathogenesis-related protein	98,14
0U16	NM**		Protein	97,12
0U17	NM		Protein	94,57
0U18	SGN-E1321440	0	Acid phosphatase	93,94
0U19	NM		Invertase pectin methylesterase inhibitor family protein	82,40
0U20	SGN-E1312621	0	---NA---	76,83
0U21	SGN-E1309331	0	mpbq msbq methyltransferase 2	75,15
0U22	SGN-E837532	2e^-31	Class iii chitinase	75,05
0U23	SGN-E1316252	0	Heat shock	73,55
0U24	SGN-E1325880	0	Swib complex baf60b domain-containing protein	72,42
0U25	SGN-E832873	1e^-119	Kunitz trypsin inhibitor	63,26
0U26	SGN-E1322100	1e^-73	Polyphenol oxidase	60,83
0U27	SGN-E660241	0	Polyphenol oxidase	57,50
0U28	SGN-E671322	0	60s acidic ribosomal protein p0	56,95
0U29	SGN-E1128614	8e^-11	Protein	53,42
0U30	SGN-E682004	0	Lipid transfer protein	50,27
0U31	SGN-E1334549	0	Type ii proteinase inhibitor family protein	49,57
0U32	SGN-E1337715	0	Protein	49,57
0U33	SGN-E640935	0	Class iii chitinase	48,21
0U34	SGN-E990795	7e^-16	Microsomal glutathione s-	47,84
0U35	SGN-E668445	0	Serine-type endopeptidase inhibitor	47,81
0U36	NM		Metallothionein-like protein	47,79
0U37	NM		Polyphenol oxidase	46,30
0U38	SGN-E640935	0	Class iii chitinase	45,63
0U39	SGN-E657601	0	Protein	44,71
0U40	SGN-E835025		4-hydroxy-3-methylbut-2-enyl diphosphate reductase	44,21
0U41	SGN-E1320197	0	Peroxisomal membrane	43,89
0U42	SGN-E636199	0	---NA---	43,72
0U43	SGN-E1333755	0	Type ii proteinase inhibitor family protein	41,88
0U44	SGN-E1337775	0	Organ-specific protein	41,68
0U45	SGN-E912118	1e^-23	Tartrate-resistant acid phosphatase type 5	41,04
0U46	SGN-E628829	8e^-94	Cell wall protein	40,77
0U47	SGN-E449176		Phospholipid glycerol acyltransferase family protein 7	39,90
0U48	SGN-E830846	0	r3h domain containing	39,64
0U49	SGN-E628829	8e^-94	Oxygen-evolving enhancer protein chloroplast	39,55
0U50	NM		Auxin-independent growth promoter protein	39,13
0U51	SGN-E1349312	0	Lipid transfer protein	39,09
0U52	SGN-E639273	1e^-160	Protein kinase domain containing expressed	38,61
0U53	SGN-E1352095	0	Protein	35,83
0U54	SGN-E838896	0	Cytochrome p450	34,98
0U55	NM		nadh dehydrogenase subunit f	34,83
0U56	SGN-E838821	0	mta sah	34,62
0U57	SGN-E669832	0	Cytokinin oxidase	33,83
0U58	SGN-E643214	0	vesicle-associated membrane protein 714	33,06
0U59	SGN-E1346029	0	Protein	32,83
0U60	SGN-E1348577	0	Protein	32,50
0U61	SGN-E674849	1e^-15	Mitochondrial chaperonin hsp60	32,40
0U62	SGN-E788243	6e^-20	Tartrate-resistant acid phosphatase type 5	32,40
0U63	SGN-E109388	3e^-31	Protein	31,93
0U64	SGN-E1326628	0	Formate dehydrogenase	31,83
0U65	SGN-E1333903	0	Elongation factor-1 alpha	31,16
0U66	NM		Protein	30,56
0U67	SGN-E1321812	0	Peptidylprolyl isomerase	30,27
0U68	SGN-E1310338	0	60s ribosomal protein	30,00
0U69	NM		Conserved hypothetical protein [Ricinus communis]	29,87
0U70	SGN-E681444	0	Homeobox-leucine zipper protein	29,71
0U71	SGN-E1168096	2e^-20	Protein	29,31
0U72	SGN-E818914	2e^-36	Gibberellin 20	29,19
0U73	SGN-E431715	7e^-11	Cellulose synthase	28,99
0U74	SGN-E650445	0	Poly -binding protein	28,29
0U75	SGN-E631106	3e^-19	orf i polyprotein	28,09
0U76	SGN-E1314273	0	Ankyrin repeat domain	27,84
0U77	SGN-E1315499	9e^-23	Atapy2 atpase nucleotide diphosphatase	27,54
0U78	SGN-E1315958	0	nadh ubiquinone oxidoreductase b14 subunit	26,38
0U79	SGN-E830665	0	sec61 transport protein	25,52
0U80	SGN-E1316141	0	Flavanone 3-hydroxylase-like protein	24,98
0U81	NM		cbl-interacting serine threonine-protein	24,92
0U82	SGN-E1342733	0	Transcription factor lim	24,70
0U83	SGN-E837532	8e^-30	Class iii chitinase	23,94
0U84	SGN-E1322208	5e^-90	Cysteine proteinase	23,93
0U85	SGN-E1322866	1e^-126	Protein	23,85
0U86	SGN-E1315443	0	Acid phosphatase	23,69
0U87	SGN-E662706	0	gdsl-motif lipase hydrolase family protein	23,27
0U88	SGN-E266690	7e^-11	Protein	23,16
0U89	SGN-E1319812	0	Protein	22,87
0U90	SGN-E1334410	0	Protein	22,82
0U91	SGN-E1321222	0	Triosephosphate isomerase	22,62
0U92	SGN-E648331	1e^-68	Serine-threonine protein plant-	22,61
0U93	SGN-E1351186	0	Class iii chitinase	22,36
0U94	SGN-E951741	2e^-22	Late embryogenesis abundant protein lea14-	22,06
0U95	SGN-E686943	0	Dehydrin	21,99
0U96	SGN-E674268	1e^-90	mta sah	21,79
0U97	SGN-E1352075	0	7-methylxanthine n-methyltransferase	21,73
0U98	SGN-E1323598	0	Transcription initiation factor iib	21,29
0U99	SGN-E1348381	1e^-151	Translation factor	21,07
0U100	SGN-E1322408	0	Beta-glucosidase-like protein	20,89

*The annotation of each sequence was established on the Coffee Genome Database [31].
**No match with any sequence on the Solanaceae Genomic Database.

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ISSN: 1471-2164

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