Table 4 Analysis of copy number state (CNS) predicted by different program combinations
From: Identification of copy number variants from exome sequence data
Program combinations | Number of genomic regions with different CNS | Number of genomic regions with same CNS | % of genomic regions with same CNS |
|---|---|---|---|
ExomeCopy, ExCopyDepth | 0 | 9 | 100.00 |
ExomeCopy, ExCopyDepth, ExomeDepth | 1 | 37 | 97.37 |
ExomeCopy, ExCopyDepth, ExomeDepth, CoNIFER | 3 | 3 | 50.00 |
ExomeCopy, ExCopyDepth, ExomeDepth, CoNIFER, XHMM | 0 | 4 | 100.00 |
ExomeCopy, ExCopyDepth, ExomeDepth, XHMM | 1 | 9 | 90.00 |
ExomeCopy, ExomeDepth | 0 | 4 | 100.00 |
ExCopyDepth, ExomeDepth | 3 | 31 | 91.18 |
ExCopyDepth, ExomeDepth, XHMM | 0 | 4 | 100.00 |