Table 4 Statistics of seven libraries and their reads mapping*
Library | CK | D1 | D2 | D3 | C1 | C2 | C3 |
|---|---|---|---|---|---|---|---|
Raw reads (M) | 8.91 | 8.34 | 8.66 | 8.92 | 8.59 | 8.38 | 8.37 |
Clean reads (M) | 8.86 | 8.29 | 8.62 | 8.87 | 8.52 | 8.32 | 8.32 |
Mapped reads (M) | 7.53 | 7.31 | 7.62 | 7.78 | 7.42 | 7.18 | 7.23 |
% of mapped reads | 85.0 | 88.2 | 88.4 | 87.7 | 87.1 | 86.3 | 86.9 |
Perfectly matched reads (M) | 6.25 | 6.12 | 6.37 | 6.53 | 6.22 | 5.90 | 5.98 |
% of perfectly matched reads | 71.6 | 73.8 | 73.9 | 74.2 | 72.9 | 70.6 | 71.9 |
Mismatched reads (M) | 1.28 | 1.19 | 1.25 | 1.25 | 1.20 | 1.29 | 1.24 |
% of mismatched reads | 14.7 | 14.4 | 14.5 | 14.2 | 14.1 | 15.5 | 15.0 |
Uniquely matched reads (M) | 5.60 | 5.27 | 5.54 | 5.75 | 5.46 | 5.27 | 5.31 |
% of uniquely matched reads | 63.2 | 63.6 | 64.3 | 64.8 | 64.1 | 63.3 | 63.8 |
Unmapped reads (M) | 1.2 | 0.98 | 1.00 | 1.02 | 1.10 | 1.14 | 1.09 |
% of unmapped reads | 13.5 | 11.8 | 11.6 | 11.5 | 12.9 | 13.7 | 13.1 |
Total unigenes | 60279 | 61029 | 60149 | 59789 | 61231 | 62693 | 61568 |
Coverage (%) | 70.0 | 70.9 | 69.9 | 69.5 | 71.2 | 72.9 | 71.5 |