From: Transcriptome instability as a molecular pan-cancer characteristic of carcinomas
Tissue | Samples | Histology | Other sample characteristics | GEO accession number | Literature references |
---|---|---|---|---|---|
Breast cancer | 84 | - | Hormone receptor status: HER2-positive (n = 35); ER/PR-positive (n = 25); ER/PR/HER2-negative (n = 24) | GSE16534 | [45] |
Cervical cancer | 28 | Squamous cell carcinoma (n = 19); adenocarcinoma (n = 9) | - | GSE27388 | [44] |
Colorectal cancer series I | 26 | Adenocarcinoma | - | GSE16534 | [45] |
Colorectal cancer series II | 101a | Adenocarcinoma | Stage: Stage I (n = 28); stage II (n = 34); stage III (n = 26); stage IV (n = 13) | GSE24550 (n = 55); GSE29638 (n = 46) | |
MSI-status: MSI-high (n = 21); MSS/MSI-low (n = 77); NA (n = 3) | |||||
Gastric cancer | 25 | Adenocarcinoma | Stage: Stage I (n = 8); stage II (n = 4); stage III (n = 5); stage IV (n = 8) | GSE13195 | - |
Lung cancer series I | 20 | Non-small-cell lung adenocarcinoma | Stage: Stage I (n = 12); stage II (n = 3); stage III (n = 5) | GSE12236 | [48] |
Lung cancer series II | 43 | Non-small-cell lung adenocarcinoma (n = 21) and squamous cell carcinoma (n = 22) | - | GSE16534 | [45] |
Neuroblastoma | 47 | - | Stage: stage I (n = 10); stage IV (n = 37) | GSE27608 | [43] |
Prostate cancer series I | 131 | Adenocarcinoma Gleason grade: Grade 5 (n = 1); grade 6 (n = 77); grade 7 (n = 42), grade 8 (n = 7); grade 9 (n = 4) | Pathologic T stage: stage 2 (n = 85); stage 3 (n = 40); stage 4 (n = 6) | GSE21034 | [47] |
Prostate cancer series II | 50a | Gleason grade: Grade 5 (n = 2); grade 6 (n = 15); grade 7 (n = 32); grade 9 (n = 1) | Pathologic T stage: stage 2 (n = 26), stage 3 (n = 24) | GSE42954 | [46] |
Normal colonic mucosa | 21a |  | 19 samples corresponding to tumors from GSE24550 and GSE29638 | GSE42690 (n = 19); GSE29638 (n = 2) | |
Normal lung | 20 | Â | Corresponding to tumors from GSE12236 | GSE12236 | [48] |
Normal prostate | 29 | Â | Corresponding to tumors from GSE21034 | GSE21034 | [47] |
Normal stomach | 23b | Â | Corresponding to tumors from GSE13195 | GSE13195 | - |