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Table 5 Logistic regression analysis among QC factors of NGS and calling discordance with Omni 2.5-8

From: Validation of multiple single nucleotide variation calls by additional exome analysis with a semiconductor sequencer to supplement data of whole-genome sequencing of a human population

Platform

A

B

C

A + B

A + C

A + B + C

Read depth

GC contents

Homopolymer

HiSeq 2500

0.0854

0.0021

0.000074

0.0896

0.104

0.106

Ion Proton

0.0759

0.0051

0.0123

0.0837

0.0759

0.0839