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Table 5 Logistic regression analysis among QC factors of NGS and calling discordance with Omni 2.5-8

From: Validation of multiple single nucleotide variation calls by additional exome analysis with a semiconductor sequencer to supplement data of whole-genome sequencing of a human population

Platform A B C A + B A + C A + B + C
Read depth GC contents Homopolymer
HiSeq 2500 0.0854 0.0021 0.000074 0.0896 0.104 0.106
Ion Proton 0.0759 0.0051 0.0123 0.0837 0.0759 0.0839