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Table 4 Proteome of the three Methanomassiliicoccales representatives compared to their phylogenetic neighbors, human gut methanogens and NCBI nr proteins

From: Comparative genomics highlights the unique biology of Methanomassiliicoccales, a Thermoplasmatales-related seventh order of methanogenic archaea that encodes pyrrolysine

Core genome of Methanomassiliicoccales: 658 protein sequences Specifica Sharedb
Phylogenetic neighbors 173 485
125 absent from human gut methanogens
Human gut methanogens 227 431
63 absent from phylogenetic neighbors
Phylogenetic neighbors and human gut methanogens 102 556 shared with at least one
Encompassing:
125 absent from human gut methanogens
71 absent from phylogenetic neighbors
360 shared with the two groups
NCBI non-redundant protein sequences database 20 (21)c 637
  1. aNumber of deduced proteins of the core genome of Methanomassiliicoccales that are not found in the corresponding organisms.
  2. bNumber of deduced proteins of the core genome of Methanomassiliicoccales that are also found in the corresponding organisms.
  3. cThe value of 21 encompasses CDS that are specific of the proteome of the Methanomassiliicoccales together with either the ones of the phylogenetic neighbors or of the human gut methanogens, without any other blast hits with the NCBI nr protein sequences database.