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Table 6 Genes involved in energy conservation in " Ca . M. alvus", " Ca . M. intestinalis" and M. luminyensis and accession numbers of the proteins they encode

From: Comparative genomics highlights the unique biology of Methanomassiliicoccales, a Thermoplasmatales-related seventh order of methanogenic archaea that encodes pyrrolysine

 

"Ca. M. alvus"

"Ca. M. intestinalis"

M. luminyensis

Transmembrane helices

ATP synthase

ahaH

AGI84762.1

AGN25422.1

WP_019178382.1

no

ahaI

AGI84763.1

AGN25423.1

WP_019178381.1

yes

ahaK

AGI84764.1

AGN25424.1

WP_019178380.1

yes

ahaE

AGI84765.1

AGN25425.1

WP_019178379.1

no

ahaC

AGI84766.1

AGN25426.1

WP_019178378.1

no

ahaF

AGI84767.1

AGN25427.1

WP_019178377.1

no

ahaA

AGI84768.1

AGN25428.1

WP_019178376.1

no

ahaB

AGI84769.1

AGN25429.1

WP_019178375.1

no

ahaD

AGI84770.1

AGN25430.1

WP_019178374.1

no

Membrane-bound proton-translocating pyrophosphatase

hppA

/

AGN26077.1

WP_019176822.1

yes

Heterodisulfide reductase

hdrA

AGI85054.1

AGN25863.1

WP_019177460.1

no

hdrB1

AGI86093.1

AGN25718.1

WP_019177711.1

no

hdrB2

AGI85474.1

AGN25916.1

WP_019176125.1

no

hdrC1

AGI86094.1

AGN25719.1

WP_019177712.1

no

hdrC2

/

/

WP_019176126.1

no

hdrD1

AGI86375.1

AGN25510.1

WP_019178460.1

no

hdrD2

AGI86212.1

AGN25649.1

WP_019177852.1

no

hdrD3

/

/

WP_019177557.1

no

hdrE

/

/

/

/

Methyl-viologen-reducing hydrogenase

mvhD1

AGI85055.1

AGN25864.1

WP_019177459.1

no

mvhD2

/

AGN25453.1

WP_019176201.1

no

mvhD3

/

/

WP_019176130.1

no

mvhG

AGI85056.1

AGN25865.1

WP_019177458.1

no

mvhA

AGI85057.1

AGN25866.1

WP_019177457.1

no

F420H2 dehydrogenase-like/11-subunit respiratory complex 1

fpoA

AHA34030.1

AGN25601.1

WP_019176183.1

yes

fpoB

AGI84952.1

AGN25602.1

WP_019176182.1

no

fpoC

AGI84953.1

AGN25603.1

WP_019176181.1

no

fpoD

AGI84954.1

AGN25604.1

WP_019176180.1

no

fpoF

/

/

/

 

fpoH

AGI84955.1

AGN25605.1

WP_019176179.1

yes

fpoI

AGI84956.1

AGN25606.1

WP_019176178.1

no

fpoJ N

AGI84957.1

AGN25607.1

WP_019176177.1

yes

fpoJ C

AGI84958.1

AGN25608.1

WP_019176176.1

yes

fpoK

AGI84959.1

AGN25609.1

WP_019176175.1

yes

fpoL

AGI84960.1

AGN25610.1

WP_019176174.1

yes

fpoM

AGI84961.1

AGN25611.1

WP_019176173.1

yes

fpoN

AGI84962.1

AGN25612.1

WP_019176172.1

yes

fpoO

/

/

/

 

Energy-converting hydrogenase

echA1

/

AGN25511.1

WP_019178471.1

yes

echA2

/

AGN26997.1

WP_019176386.1

yes

echB1

/

AGN25512.1

WP_019178472.1

yes

echB2

/

AGN26998.1

WP_019176385.1

yes

echC1

/

AGN25513.1

WP_019178473.1

no

echC2

/

AGN26999.1

WP_019176384.1

no

echD1

/

AGN25514.1

WP_019178474.1

no

echD2

/

AGN27000.1

WP_019176383.1

no

echE1

/

AGN25515.1

WP_019178475.1

no

echE2

/

AGN27001.1

WP_019176382.1

no

echF1

/

AGN25516.1

WP_019178476.1

no

echF2

/

AGN27002.1

WP_019176381.1

no

Liposoluble electron transporter synthesis

ispA a

AGI84964.1

AGN25614.1

WP_019176170.1

/

ubiA b

AGI85875.1

AGN26416.1

WP_019178349.1

/

  

AGN26109.1

  

ubiE c

AGI85874.1

AGN26417.1

WP_019178072.1

/

  

AGN25541.1

WP_019178198.1

 
   

WP_019176998.1

 
  1. aencoding a geranylgeranyl pyrophosphate synthase (GGPPS).
  2. bencoding a1,4-dihydroxy-2-naphthoate octaprenyltransferase (DHNOPT).
  3. cencoding a 2-heptaprenyl-1,4-naphthoquinone methyltransferase (HPNQMT).