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Table 1 Details of the reads aligned to the P. tricornutum genome

From: The diversity of small non-coding RNAs in the diatom Phaeodactylum tricornutum

Condition Dark (D) Low light (LL) Normal light (NL) High light (HL) Iron starv. (-Fe) Total
Reads sequenced 1,926,421 2,053,284 1,601,446 826,528 1,695,351 8,103,030
Aligned (fraction) 1,732,515 (0.9) 1,861,776 (0.91) 1,346,817 (0.84) 744,044 (0.9) 1,550,158 (0.91) 7,235,310 (0.89)
Overlap       
To genes (%) 217,319 (0.13) 233,246 (0.13) 190,670 (0.14) 96,151 (0.13) 167,536 (0.11) 904,922 (0.13)
Repeat regions (%) 821,939 (0.47) 1,039,657 (0.56) 683,533 (0.51) 353,056 (0.47) 643,986 (0.42) 3,542,171 (0.49)
Intergenic regions (%) 362,555 (0.21) 339,074 (0.18) 244,827 (0.18) 116,795 (0.16) 182,682 (0.12) 1,245,933 (0.17)
tRNA genes 36854 51959 40617 46477 87992 263899
Other ncRNAs (RFAM) 89658 34182 47847 28000 126244 325931
  1. For each condition, the summary of the number of reads aligning to each genomic location is reported.
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