Table 1 Details of the reads aligned to the P. tricornutum genome
From: The diversity of small non-coding RNAs in the diatom Phaeodactylum tricornutum
Condition | Dark (D) | Low light (LL) | Normal light (NL) | High light (HL) | Iron starv. (-Fe) | Total |
|---|---|---|---|---|---|---|
Reads sequenced | 1,926,421 | 2,053,284 | 1,601,446 | 826,528 | 1,695,351 | 8,103,030 |
Aligned (fraction) | 1,732,515 (0.9) | 1,861,776 (0.91) | 1,346,817 (0.84) | 744,044 (0.9) | 1,550,158 (0.91) | 7,235,310 (0.89) |
Overlap | Â | Â | Â | Â | Â | Â |
To genes (%) | 217,319 (0.13) | 233,246 (0.13) | 190,670 (0.14) | 96,151 (0.13) | 167,536 (0.11) | 904,922 (0.13) |
Repeat regions (%) | 821,939 (0.47) | 1,039,657 (0.56) | 683,533 (0.51) | 353,056 (0.47) | 643,986 (0.42) | 3,542,171 (0.49) |
Intergenic regions (%) | 362,555 (0.21) | 339,074 (0.18) | 244,827 (0.18) | 116,795 (0.16) | 182,682 (0.12) | 1,245,933 (0.17) |
tRNA genes | 36854 | 51959 | 40617 | 46477 | 87992 | 263899 |
Other ncRNAs (RFAM) | 89658 | 34182 | 47847 | 28000 | 126244 | 325931 |