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Table 1 Top ten significantly induced and repressed DEGs under iron stress at each time and tissue

From: Identification of candidate genes involved in early iron deficiency chlorosis signaling in soybean (Glycine max) roots and leaves

Leaf one hour
Glyma 1.1 ID Log2fold change TAIR10 annotation E-value
Glyma11g12650 5.00 NA NA
Glyma07g13790 3.78 PLP1, AtPLAIVA | Acyl transferase/hydrolase/lysophospholipase superfamily protein 6.0E-89
Glyma14g40400 3.37 GASA1 | GAST1 protein homolog 1 4.0E-32
Glyma05g38351 3.06 MTN3, SWEET12, AtSWEET12 | homolog of Medicago truncatula 1.0E-53
Glyma11g33040 2.83 OXS3, ATOXS3 | oxidative stress 3 2.0E-15
Glyma18g05160 2.59 OXS3, ATOXS3 | oxidative stress 3 6.0E-16
Glyma01g07860 1.28 Copper amine oxidase family protein 0.0E + 00
Glyma01g35620 -4.38 Long-chain fatty alcohol dehydrogenase family protein 0.0E + 00
Glyma09g35210 -4.05 Long-chain fatty alcohol dehydrogenase family protein 0.0E + 00
Glyma18g38410 -4.05 MuDR family transposase 2.0E-44
Glyma16g10880 -3.78 DXR, PDE129 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase 0.0E + 00
Glyma16g15790 -3.61 WEB1 | Plant protein of unknown function (DUF827) 4.0E-170
Glyma13g02510 -3.36 NIA1, GNR1, NR1 | nitrate reductase 1 0.0E + 00
Glyma06g11430 -3.24 NIA1, GNR1, NR1 | nitrate reductase 1 0.0E + 00
Glyma13g39440 -2.83 CER4, G7, FAR3 | Jojoba acyl CoA reductase-related male sterility protein 0.0E + 00
Glyma01g25890 -2.80 Major facilitator superfamily protein 0.0E + 00
Glyma07g37380 -2.77 Protein phosphatase 2C family protein 1.0E-164
Leaf six hours    
Glyma 1.1 ID Log 2 fold change TAIR10 annotation E-value
Glyma15g18360 6.37 XTR6, XTH23 | xyloglucan endotransglycosylase 6 3.0E-141
Glyma02g39320 5.94 ASN1, DIN6, AT-ASN1 | glutamine-dependent asparagine synthase 1 0.0E + 00
Glyma03g37970 4.63 ATGPAT2, GPAT2 | glycerol-3-phosphate acyltransferase 2 0.0E + 00
Glyma09g24170 4.18 Heavy metal transport/detoxification superfamily protein 2.0E-19
Glyma11g27480 3.81 ASN1, DIN6, AT-ASN1 | glutamine-dependent asparagine synthase 1 0.0E + 00
Glyma06g08540 3.80 RD22, ATRD22 | BURP domain-containing protein 4.0E-124
Glyma08g45281 3.77 NA NA
Glyma01g32450 3.70 WNK5 | with no lysine (K) kinase 5 0.0E + 00
Glyma03g37990 3.61 ATGPAT2, GPAT2 | glycerol-3-phosphate acyltransferase 2 0.0E + 00
Glyma16g21050 3.59 ABCG14 | ATP-binding cassette 14 0.0E + 00
Glyma14g35340 -5.53 EXO | Phosphate-responsive 1 family protein 2.0E-146
Glyma14g35330 -4.69 EXO | Phosphate-responsive 1 family protein 5.0E-158
Glyma01g01500 -4.47 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 1.0E-80
Glyma01g01530 -4.12 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 1.0E-10
Glyma11g03500 -4.08 Eukaryotic aspartyl protease family protein 1.0E-170
Glyma13g33780 -3.90 NA NA
Glyma16g01430 -3.59 SAUR-like auxin-responsive protein family 6.0E-37
Glyma02g38200 -3.58 Octicosapeptide/Phox/Bem1p family protein 2.0E-49
Glyma06g10710 -3.35 EXO | Phosphate-responsive 1 family protein 9.0E-154
Glyma02g06810 -3.33 Unknown protein 1.0E-37
Root one hour    
Glyma 1.1 ID Log 2 fold change TAIR10 annotation E-value
Glyma10g02730 4.85 RCI3, RCI3A | Peroxidase superfamily protein 9.0E-120
Glyma17g27187 4.66 Kinase interacting (KIP1-like) family protein (NET1D) 2.0E-139
Glyma03g28850 3.90 BG1 | beta-1,3-glucanase 1 1.0E-138
Glyma02g17060 3.85 RCI3, RCI3A | Peroxidase superfamily protein 3.0E-118
Glyma17g23660 3.77 Kinase interacting (KIP1-like) family protein (NET1D) 1.0E-140
Glyma19g31580 3.67 BG1 | beta-1,3-glucanase 1 3.0E-137
Glyma15g12600 3.64 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 1.0E-35
Glyma17g27135 3.61 Kinase interacting (KIP1-like) family protein (NET1D) 7.0E-147
Glyma03g02834 3.40 NA NA
Glyma09g01680 3.16 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 2.0E-34
Glyma05g02040 -3.46 NA NA
Glyma08g27660 -3.25 ATMYB121, MYB121 | myb domain protein 121 2.0E-62
Glyma18g38410 -2.86 MuDR family transposase 2.0E-44
Glyma10g41670 -2.83 NA NA
Glyma11g05517 -2.58 NA NA
Glyma06g05990 -2.50 Protein kinase superfamily protein 0.0E + 00
Glyma10g28850 -2.35 Unknown protein 1.0E-48
Glyma07g18280 -2.30 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 4.0E-170
Glyma20g23020 -2.27 Unknown protein 1.0E-49
Glyma04g17300 -2.23 NA NA
Root six hours    
Glyma 1.1 ID Log 2 fold change TAIR10 annotation E-value
Glyma19g41920 5.74 NA NA
Glyma13g37770 3.60 Wound-responsive family protein 3.0E-17
Glyma03g39341 3.45 AtPP2-B15, PP2-B15 | phloem protein 2-B15 1.0E-18
Glyma15g10693 3.40 Protein kinase superfamily protein 2.0E-78
Glyma20g00604 3.14 ATOMT1, OMT1 | O-methyltransferase 1 6.0E-53
Glyma01g06774 3.10 ATBOR4, BOR4 | HCO3- transporter family 2.0E-20
Glyma05g36310 2.90 ACO1, ATACO1 | ACC oxidase 1 2.0E-159
Glyma14g39910 2.84 Prolyl oligopeptidase family protein 0.0E + 00
Glyma13g10791 2.47 ZIP1 | zinc transporter 1 precursor 5.0E-129
Glyma18g41760 2.36 Proton pump interactor 1 2.0E-45
Glyma05g09990 -4.03 NA NA
Glyma16g29233 -3.96 NA NA
Glyma16g29216 -3.89 Disease resistance family protein/LRR family protein 5.0E-93
Glyma05g16286 -3.86 NA NA
Glyma13g12815 -3.85 NA NA
Glyma15g03080 -3.55 NA NA
Glyma04g33460 -3.54 NA NA
Glyma01g04545 -3.53 NA NA
Glyma01g04545 -3.54 NA NA
Glyma09g24780 -3.51 NA NA
  1. The top and bottom ten genes significantly (FDR < 0.05) differentially expressed at each time and tissue under iron stress. Glyma1.1 ID refers to Glycine max version 1.1 release. A positive log2 fold change represents induction in response to iron deficiency while a negative fold change represents repression in response to iron deficiency. The top A. thaliana hit (TAIR version 10) was determined by BLASTP [52] of Glyma1.1 primary proteins against A. thaliana proteins (TAIR10, E < 10-6). DEGs with no BLASTP hit to A. thaliana are indicated by NA (not applicable). Full annotation information can be found in Additional files 2, 3, 4 and 5.
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