Table 2 Overrepresented GO terms in leaves and roots DEGs
Leaves description: biological processes | GO terms | DEGs | P-value |
|---|---|---|---|
DNA unwinding involved in replication | GO:0006268 | 7 | 0 |
Membrane disassembly | GO:0030397 | 12 | 0 |
Wax biosynthesis and metabolism | GO:0010025, GO:0010166 | 12 | 0 |
Defense response to bacterium | GO:0009816 | 14 | 0 |
DNA methylation | GO:0006306 | 11 | 0 |
Lipid metabolism | GO:0006629 | 76 | 0 |
Single-organism biosynthesis and metabolism | GO:0044710, GO:0044711 | 167 | 0 |
Organic hydroxy compound biosynthesis and metabolism | GO:0006066, GO:1901615, GO:1901617 | 30 | 0.005 |
Negative regulation of developmental growth | GO:0048640 | 3 | 0.007 |
Response to stimulus | GO:0050896 | 197 | 0.007 |
Cuticle development | GO:0042335 | 9 | 0.009 |
Root development and morphogenesis | GO:0010101, GO:0010015, GO:0010311, GO:0022411, GO:0048528 | 30 | 0.01 |
Cellular response to sucrose starvation, mannitol and sorbitol | GO:0018008, GO:0018201, GO:0043617, GO:0071325, GO:0072709 | 3 | 0.012 |
Organic acid biosynthesis | GO:0016053, GO:0046394, GO:0072330 | 50 | 0.041 |
Leaves description: molecular functions | Â | Â | |
Xyloglucan:xyloglucosyl transferase activity | GO:0016762 | 11 | 0 |
Transferase activity, transferring acyl groups | GO:0016746 | 25 | 0 |
Tetrapyrrole binding | GO:0046906 | 20 | 0.004 |
Oxidoreductase activity | GO:0016491, GO:0016661, GO:0016701, GO:0016702 | 59 | 0.029 |
Phosphatidylinositol binding | GO:0005547, GO:0043325 | 2 | 0.033 |
Carboxylic ester hydrolase activity | GO:0052689 | 18 | 0.033 |
Catalytic activity | GO:0003824 | 209 | 0.041 |
Roots description: biological processes | GO Terms | DEGs | P -value |
Cell junction organization and assembly | GO:0034329, GO:0034330 | 12 | 0 |
Root development | GO:0009913, GO:0010053, GO:0022622, GO:0048364, GO:0048640 | 40 | 0 |
Response to ethylene and other stimuli | GO:0050896, GO:0070887, GO:0071369 | 198 | 0 |
Phenylpropanoid biosynthesis and metabolism | GO:0009698, GO:0009699, GO:0009812, GO:0009813, GO:0009962, GO:0009963, GO:0043455, GO:1900376, GO:1900378, GO:2000762 | 27 | 0.002 |
Response to oxidative and other stress | GO:0006950, GO:0006979 | 155 | 0.002 |
Zinc ion transmembrane transport | GO:0006829, GO:0071577 | 6 | 0.003 |
Steroid biosynthesis and metabolism | GO:0006694, GO:0008202 | 16 | 0.009 |
Coumarin biosynthesis and metabolism | GO:0009804, GO:0009805 | 9 | 0.015 |
N-terminal peptidyl-glycine N-myristoylation | GO:0018008 | 2 | 0.021 |
Immune system process | GO:0002376 | 45 | 0.027 |
Cellular response to starvation | GO:0009267 | 23 | 0.03 |
Single-organism biosynthesis and metabolism | GO:0044710, GO:0044711 | 140 | 0.036 |
Cellular amine metabolic process | GO:0044106 | 12 | 0.038 |
Cell wall organization or biogenesis | GO:0071554 | 44 | 0.039 |
Cell communication | GO:0007154 | 85 | 0.044 |
Roots description: molecular functions | Â | Â | |
Antioxidant activity | GO:0016209, GO:0016684 | 22 | 0 |
Tetrapyrrole binding | GO:0046906 | 26 | 0 |
Oxidoreductase activity | GO:0016491 | 58 | 0.002 |
Protein homodimerization activity | GO:0042803 | 13 | 0.002 |
Zinc ion transmembrane transporter activity | GO:0005385 | 6 | 0.002 |
Regulatory region nucleic acid binding | GO:0001067 | 32 | 0.003 |
ADP binding | GO:0043531 | 17 | 0.005 |
Identical protein binding | GO:0042802 | 16 | 0.005 |