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Table 2 Results from creating splice junction databases and using them for searching proteomic datasets

From: Using Galaxy-P to leverage RNA-Seq for the discovery of novel protein variations

Sample Splice database
Size Min. depth Peptide IDs*
Jurkat human cells 33,372 6 67
B6 mouse islets 57,587 4 64
CAST mouse islets 43,244 4 66
  1. *peptide passing a 1% local FDR.
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