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Table 2 Results from creating splice junction databases and using them for searching proteomic datasets

From: Using Galaxy-P to leverage RNA-Seq for the discovery of novel protein variations

Sample

Splice database

Size

Min. depth

Peptide IDs*

Jurkat human cells

33,372

6

67

B6 mouse islets

57,587

4

64

CAST mouse islets

43,244

4

66

  1. *peptide passing a 1% local FDR.
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