From: Using Galaxy-P to leverage RNA-Seq for the discovery of novel protein variations
Sample | RNA-Seq reads | Mass spectra | Original database | Reduced database | |||
---|---|---|---|---|---|---|---|
# entries | Peptide IDs* | # entries | Peptide IDs* | % increase | |||
Jurkat human cells | 80Â M | 500Â K | 104,310 | 73,123 | 82,101 | 73,436 | 0.4 |
B6 mouse islets | 94Â M | 250Â K | 52,165 | 30,212 | 18,052 | 30,220 | 0.3 |
CAST mouse islets | 126Â M | 250Â K | 52,165 | 28,902 | 16,940 | 28,823 | 0.2 |