Table 1 Results of transcriptome sequencing and SNP discovery in cultivated and wild chickpea in comparison to the reference CDC Frontier genome [36]
Chickpea accessions | Species (Desi/Kabuli) | Important traits | Total 454 reads | Number of SNPs | Average read depth |
|---|---|---|---|---|---|
CDC Frontier | Cicer arietinum L. (Kabuli) | Yield, Ascochyta blight resistance, photoperiod sensitivity | 490,245 | NA | NA |
Amit | Cicer arietinum L. (Kabuli) | Yield, Ascochyta blight resistance | 496,109 | 1,592 | 7 |
CDC Xena | Cicer arietinum L. (Kabuli) | Yield, seed quality | 531,970 | 1,813 | 7 |
ICC 12512-1 | Cicer arietinum L. (Desi) | Ascochyta blight resistance | 507,802 | 2,872 | 8 |
ICCV 96029 | Cicer arietinum L (Desi) | Earliness, double podding, photoperiod insensitivity | 520,733 | 3,286 | 8 |
Y9563-28 | Cicer arietinum L (Desi) | Earliness, double podding | 509,682 | 2,898 | 8 |
Cr 5-10 | Cicer reticulatum L. (wild) | Rust (Uromyces ciceris-arietini) resistance | 605,001 | 28,712 | 10 |
ILWC 118 | Cicer reticulatum L. (wild) | Ascochyta blight resistance | 560,322 | 28,071 | 11 |
Total | Â | Â | 4,221,864 | 51,632* | Â |