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Table 1 Whole genome analysis of the chromosome of Salmonella Enteritidis isolates of Canadian origin

From: High resolution assembly and characterization of genomes of Canadian isolates of Salmonella Enteritidis

ISOLATE ID

SEQUENCING STRATEGY

GENOME ASSEMBLY STATISTICS (NG50 contig size)

GENOME SIZE (bp)

NUMBER OF GENES

SE 1

Illumina (HiSeq), mate paired

474,844

4,678,914

4,707

SE 2

Illumina (HiSeq), mate paired

489,409

4,678,744

4,702

SE 3

Illumina (HiSeq), mate paired

728,910

4,679,131

4,702

SE 4

Illumina (HiSeq), mate paired

445,313

4,678,377

4,703

SE 5

Illumina (HiSeq), mate paired

478,671

4,678,571

4,703

SE 6

454 shot gun

125,874

4,677,619

4,712

SE 7

454, shot gun

150,082

4,710,936

4,736

SE 8

454, paired end

312,607

4,678,101

4,714

SE 9

454, paired end

225,654

4,671,261

4,684

SE 10

454, paired end

263,672

4,709,890

4,745

SE 11

454, paired end

290,941

4,702,741

4,729

  1. Whole genome assembly of Salmonella Enteritidis chromosome was carried out from raw reads obtained from Illumina HiSeq or Roche 454 next generation sequencing platforms using a hybrid method consisting of de novo and reference assembly aided by genome mapping (see under Materials and Methods). Gene annotation of the finished genomes was carried out using xBASE, BaSys and RAST annotation programs.