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Table 1 Whole genome analysis of the chromosome of Salmonella Enteritidis isolates of Canadian origin

From: High resolution assembly and characterization of genomes of Canadian isolates of Salmonella Enteritidis

ISOLATE ID SEQUENCING STRATEGY GENOME ASSEMBLY STATISTICS (NG50 contig size) GENOME SIZE (bp) NUMBER OF GENES
SE 1 Illumina (HiSeq), mate paired 474,844 4,678,914 4,707
SE 2 Illumina (HiSeq), mate paired 489,409 4,678,744 4,702
SE 3 Illumina (HiSeq), mate paired 728,910 4,679,131 4,702
SE 4 Illumina (HiSeq), mate paired 445,313 4,678,377 4,703
SE 5 Illumina (HiSeq), mate paired 478,671 4,678,571 4,703
SE 6 454 shot gun 125,874 4,677,619 4,712
SE 7 454, shot gun 150,082 4,710,936 4,736
SE 8 454, paired end 312,607 4,678,101 4,714
SE 9 454, paired end 225,654 4,671,261 4,684
SE 10 454, paired end 263,672 4,709,890 4,745
SE 11 454, paired end 290,941 4,702,741 4,729
  1. Whole genome assembly of Salmonella Enteritidis chromosome was carried out from raw reads obtained from Illumina HiSeq or Roche 454 next generation sequencing platforms using a hybrid method consisting of de novo and reference assembly aided by genome mapping (see under Materials and Methods). Gene annotation of the finished genomes was carried out using xBASE, BaSys and RAST annotation programs.
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