Table 1 Real genomic datasets tested in this study
Category | Selfgroup | Closegroup | No. of genes | Date of BLAST | Max. no. of hits | List of input genomes (organism name and NCBI accn. no.) |
|---|---|---|---|---|---|---|
Alphaproteobacteria | SFG Rickettsia | Rickettsiales | 8484 | Jan. 2013 | 200 | R. akari str. Hartford [GenBank:NC_009881] |
R. felis URRWXCal2 [GenBank:NC_007109] | ||||||
R. massiliae MTU5 [GenBank:NC_009900] | ||||||
R. slovaca 13-B [GenBank:CP002428] | ||||||
R. rickettsii str. ‘Sheila Smith’ [GenBank:NC_009882] | ||||||
R. africae ESF-5 [GenBank:NC_012633] | ||||||
R. conorii str. Malish 7 [GenBank:NC_003103]1 | ||||||
Firmicutes | Streptococcus | Bacilli | 11906 | Nov. 2013 | 100 | S. anginosus C238 [GenBank:NC_022239] |
S. gallolyticus UCN34 [GenBank:NC_013798] | ||||||
S. intermedius B196 [GenBank:NC_022246] | ||||||
S. mutans LJ23 [GenBank:NC_017768] | ||||||
S. pneumonia A026 [GenBank:NC_022655] | ||||||
S. suis JS14 [GenBank:NC_017618] | ||||||
Epsilonproteobacteria | Helicobacter | Campylobacterales | 10531 | Mar. 2013, Nov. 20132 | 200 | H. acinonychis Sheeba [GenBank:NC_008229] |
H. bizzozeronii CIII-1 [GenBank:NC_015674] | ||||||
H. cinaedi PAGU611 [GenBank:NC_017761] | ||||||
H. felis ATCC 49179 [GenBank:NC_014810] | ||||||
H. mustelae 12198 [GenBank:NC_013949] | ||||||
H. hepaticus ATCC 51449 [GenBank:NC_004917] | ||||||
Gammaproteobacteria | Erwinia | Enterobacteriales | 19013 | Mar. 2013 | 200 | E. amylovora ATCC 49946 [GenBank:NC_013971] |
E. billingiae Eb661 [GenBank:NC_014306] | ||||||
E. sp. Ejp617 [GenBank:NC_017445] | ||||||
E. pyrifoliae DSM 12163 [GenBank:NC_017390] | ||||||
E. tasmaniensis Et1/99 [GenBank:NC_010694] | ||||||
Actinobacteria | Mycobacterium africanum | Mycobacterium | 3830 | Oct. 2013 | 100 | M. africanum GM041182 [GenBank:NC_015758] |
Unicellular red algae | Galdieria sulphuraria | Eukaryota | 7174 | Dec. 2013 | 50 | G. sulphuraria [GenBank:ASM34128v1]3 |
Higher animal | Homo sapiens | Animalia | 225164 | Nov. 2013 | 1000 | H. sapiens [GenBank:GCF_000001405.13] |