Gene symbol | Fold change | Gene symbol | Fold change | Gene symbol | Fold change |
---|---|---|---|---|---|
(TNFα vs non TNFα treated) | (TNFα vs non TNFα treated) | (TNFα vs non TNFα treated) | |||
Cell death | |||||
TGM2 | 31 | XAF1 | 6.8 | IER3 | 3.6 |
CASP4 | 15.2 | BCL2A1 | 5.3 | PYCARD1 | 3.3 |
IFI6 | 9.2 | SAMD9 | 4.9 | TNFSF13B | 3.2 |
BEX2 | 8.6 | EGLN3 | 4.5 | RIPK4 | 3.1 |
BIRC3 | 8.6 | TRAF1 | 4.3 | ||
Cell morphology | |||||
KRT8 | 10 | ERP27 | 3.5 | NCK2 | 3.1 |
STMN2 | 7.7 | PDPN | 3.5 | TACC1 | 3.1 |
MAP2 | 4.7 | FMNL3 | 3.4 | GPHN | 3.0 |
DCLK1 | 4.5 | MSN | 3.4 | MFAP2 | 3.0 |
KRT18 | 4.2 | EMP3 | 3.3 | ||
Cytokines, hormones and receptors | |||||
GPR77 | 61.5 | CD83 | 6.3 | PLAUR | 3.8 |
CD44 | 21.5 | ROBO1 | 6.1 | HLA-DQA1 | 3.7 |
IFI44 | 14.9 | IFIT2 | 6.0 | NTRK1 | 3.6 |
CD19 | 14.2 | HLA-A | 5.9 | IL36A | 3.6 |
IFI16 | 13.6 | HLA-DQA2 | 5.9 | EMR3 | 3.5 |
PTGER4 | 13.2 | IL1RN | 5.9 | TCRA | 3.5 |
CCL2 | 13.1 | GPR68 | 5.2 | TGFB1 | 3.5 |
SLCO4A1 | 12.3 | HLA-DMB | 5.0 | GKN2 | 3.4 |
CD200 | 10.8 | ICAM1 | 4.7 | IFITM1 | 3.4 |
CXCL10 | 10.8 | HLA-DRA | 4.6 | HLA-DRB3 | 3.3 |
CD40 | 10.1 | LYVE1 | 4.6 | FGF2 | 3.2 |
IFI27 | 9.5 | IL1R1 | 4.5 | VIPR2 | 3.2 |
PLXND1 | 9.4 | NR4A2 | 4.3 | GPR56 | 3.1 |
IFIH1 | 7.1 | OLR1 | 4.0 | CD72 | 3.1 |
JAG1 | 6.7 | NRG1 | 3.9 | IGF2 | 3.1 |
CCL5 | 6.4 | PDGFB | 3.8 | ||
Extracellular matrix and synthesis | |||||
TNC | 52.3 | COL15A1 | 9.4 | FMOD | 4.0 |
COL6A1 | 14.5 | COL16A1 | 5.0 | AGRN | 3.8 |
LOXL4 | 8.8 | COL5A3 | 4.6 | FN1 | 3.3 |
Intercellular and cell to matrix adhesion | |||||
BST2 | 6.4 | THBS3 | 3.6 | CEACAM8 | 3.2 |
VCAM1 | 5.3 | SPP1 | 3.6 | CDH1 | 3.1 |
CD82 | 4.8 | CD9 | 3.6 | ||
ITGA5 | 4.5 | NUAK2 | 3.4 | ||
Ion transport | |||||
KCNMA1 | 8.9 | FXYD3 | 3.9 | CLCA3P | 3.1 |
CACNA1G | 6.9 | GRIA3 | 3.7 | SLC25A12 | 3.0 |
CNGA3 | 4.3 | TPCN1 | 3.4 | ||
Proteolysis and inhibition | |||||
SLPI | 58.6 | MMP2 | 5.0 | CTSH | 3.5 |
UBD | 17.1 | PSMB10 | 3.9 | TFPI2 | 3.5 |
SERPINB2 | 14.9 | PSMB8 | 3.8 | TRIM21 | 3.2 |
SERPINA5 | 12.5 | ADAMTSL4 | 3.8 | UBA7 | 3.2 |
ISG15 | 10.8 | ERAP2 | 3.8 | PRSS2 | 3.1 |
ADAM23 | 8.3 | USP18 | 3.7 | CFD | 3.1 |
A2M | 5.6 | TIMP3 | 3.7 | CSTB | 3.1 |
PSMB9 | 5.1 | C1S | 3.6 | ||
Transcriptional regulation | |||||
GFI1 | 14.1 | IRF1 | 4.7 | NFKB2 | 3.7 |
NFKBIA | 9.8 | HEYL | 4.7 | NFKBIZ | 3.6 |
FOXA3 | 9.0 | HES4 | 4.6 | H19 | 3.5 |
MYB | 8.4 | IRF8 | 4.2 | SNAI1 | 3.4 |
MIR147 | 5.3 | LRRFIP1 | 4.0 | NOSTRIN | 3.4 |
TBX3 | 5.2 | NUPR1 | 4.0 | DTX1 | 3.3 |
BHLHE40 | 4.8 | RBPMS | 3.9 | FOXS1 | 3.3 |
TCF7 | 4.8 | IKZF3 | 3.8 | STAT5A | 3.1 |
Transport | |||||
RTP4 | 14.5 | RAB3IP | 3.8 | SLC37A1 | 3.5 |
ABCC3 | 8.0 | ANKH | 3.7 | SLCO2A1 | 3.4 |
TF | 4.1 | TAP1 | 3.5 | SYNGR1 | 3.1 |
Other enzymes | |||||
PRKCB | 19.3 | PNPO | 5.0 | TPST2 | 3.9 |
PTGIS | 12.2 | PIK3CD | 5.0 | PRKCQ | 3.9 |
ALDH1A3 | 11.7 | GBP4 | 4.8 | CA5B | 3.8 |
OAS2 | 10.5 | MIOX | 4.7 | PARP14 | 3.7 |
PON3 | 9.3 | ADCY2 | 4.7 | PARP12 | 3.7 |
DDC | 8.7 | ADH6 | 4.5 | LRAT | 3.5 |
IDO1 | 7.7 | UMPS | 4.4 | CKB | 3.4 |
MX2 | 7.5 | CA2 | 4.4 | CAMK1D | 3.3 |
HSD11B1 | 7.0 | RSAD2 | 4.3 | FBP1 | 3.3 |
MX1 | 6.6 | PPP2R3C | 4.3 | PARP9 | 3.2 |
OAS1 | 5.5 | BCAT2 | 4.3 | PNKD | 3.2 |
ABHD3 | 5.2 | SQRDL | 4.1 | CA8 | 3.1 |
GLDC | 5.2 | ISG20 | 4.0 | ||
XDH | 5.2 | APOBEC3B | 3.9 | ||
Other signalling | |||||
ENTPD3 | 17.7 | DNER | 5.8 | ARHGAP24 | 4.8 |
ARHGEF5 | 13.6 | RASAL1 | 5.2 | DDX58 | 3.3 |
NFKB1A | 9.8 | TNIP1 | 5.5 | WNT11 | 3.2 |
ARHGAP29 | 8.7 | ARHGEF11 | 5.1 | NKG7 | 3.4 |
ANXA8L1 | 8.0 | ARRDC2 | 4.3 | CDC42EP1 | 3.3 |
SLAMF8 | 7.4 | RGS16 | 4.1 | PDE4B | 3.5 |
TAC3 | 8.7 | SHISA3 | 4.1 | IFI30 | 3.2 |
GAL | 4.6 | GBP5 | 4.0 | RNF128 | 3.0 |
DAPP1 | 5.0 | ARHGDIB | 3.8 | ||
Other | |||||
TREM1 | 11.2 | TMEM45B | 4.6 | DPY19L1 | 3.6 |
PLAC8 | 7.7 | MS4A8B | 4.6 | NELL2 | 3.6 |
PARM1 | 6.5 | SAA3 | 4.6 | TMEM140 | 3.4 |
EPB41L3 | 6.3 | SELENBP1 | 4.4 | CCDC85C | 3.4 |
FATE1 | 6.2 | CRYBB1 | 4.4 | OAF | 3.2 |
TRIM47 | 5.4 | HPCAL1 | 4.2 | TMED6 | 3.2 |
SPARCL1 | 5.4 | UNC13D | 4.0 | ABTB2 | 3.2 |
NUCB2 | 5.2 | EPSTI1 | 3.9 | CRIP2 | 3.2 |
PDLIM4 | 4.8 | HSPB6 | 3.8 | CSRP2 | 3.1 |