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Table 2 Relative cysteine contents by secretome size, phylogeny and lifestyle

From: Compositions of fungal secretomes indicate a greater impact of phylogenetic history than lifestyle adaptation

A) Stringent definition: cysteine-rich ≥4 cysteines and ≥5% cysteines

 

Species

C-rich total (%)

SSPs (%)

SSCPs (%)

Overall

36

6.3

47

5.5

Secretome size

    

 Class 1

14

3.2

41

2.8

 Class 2

16

7.6

49

6.7

 Class 3

6

9.6

57

8.6

Phylogeny

    

 Oomycota

3

6.1

56

4.7

 Saccharomycotina

9

2.2

42

2.1

 Pezizomycotina

11

8.6

47

7.5

 Basidiomycota

8

8.6

48

8.0

Lifestyle

    

 Saprophyte

15

5.9

43

5.4

 Plant pathogen

11

8.0

52

7.0

 Animal pathogen

8

3.7

44

2.8

B) Relaxed definition: cysteine-rich ≥4 cysteines

 

Species

C-rich total (%)

SSPs (%)

SSCPs (%)

Overall

36

60

47

21

Secretome size

    

 class 1

14

61

41

16

 class 2

16

61

49

23

 class 3

6

57

57

26

Phylogeny

    

 Oomycota

3

56

56

21

 Saccharomycotina

9

60

42

15

 Pezizomycotina

11

65

47

24

 Basidiomycota

8

59

48

22

Lifestyle

    

 saprophyte

15

62

43

20

 plant pathogen

11

58

52

23

 animal pathogen

8

62

44

18

  1. Numbers of species and average contents of total cysteine-rich proteins, SSPs and SSCPs in total secretomes in secretome size-, phylogenetic and lifestyle-groupings containing at least three species; SSP & SSCP ≤ 300 residues without signal peptides.