A SAGE based approach to human glomerular endothelium: defining the transcriptome, finding a novel molecule and highlighting endothelial diversity

Sengoelge, Guerkan; Winnicki, Wolfgang; Kupczok, Anne; von Haeseler, Arndt; Schuster, Michael; Pfaller, Walter; Jennings, Paul; Weltermann, Ansgar; Blake, Sophia; Sunder-Plassmann, Gere

doi:10.1186/1471-2164-15-725

Table 4 List of all 18 non-glomerular endothelial SAGE libraries analyzed. 16 were merged to create the non-glomerular endothelial reference SAGE library

From: A SAGE based approach to human glomerular endothelium: defining the transcriptome, finding a novel molecule and highlighting endothelial diversity

SAGE library	Number of tags	Gene expression omnibus (GEO) dataset number	Number of NRGN tag per 200,000
Vascular_endothelium_breast_carcinoma_associated_P1H12 + _AP_DCIS6	65223	GSM384015	9
Vascular_endothelium_hemangioma_B_146	75680	GSM384016	8
Vascular_normal_CS_control	51562	GSM384019	0
Vascular_normal_CS_VEGF+	57316	GSM384020	7
Endothelium of normal colon	95327	provided by Dr. K. Kinzler	17
Endothelium of colon tumor	95543	provided by Dr. K. Kinzler	2
Microvascular endothelial cells cultured on advanced glycatedfibronectin and exposed to sustained high shear stress	24773	GSM45608	8
Microvascular endothelial cells cultured on fibronectin and exposed to sustained high shear stress	30615	GSM32266	19
Microvascular endothelial cells cultured on fibronectin and exposed to sustained low shear stress	31141	GSM41248	19
Vascular_endothelium_normal_liver_associated_AP_NLEC1	77759	GSM384018	0
Human Aortic Endothelial Cell Exposure to 0 h Short-Term Chronic Hypoxia (Control)	38446	GSM62240	57
Human Aortic Endothelial Cell Exposure to 8 h Short-Term Chronic Hypoxia	40629	GSM62241	39
Human Aortic Endothelial Cell Exposure to 24 h Short-Term Chronic Hypoxia	42371	GSM62242	52
Human Pulmonary Artery Endothelial Cell Exposure to 0 h Short-Term Chronic Hypoxia (Control)	25706	GSM62243	46
Human Pulmonary Artery Endothelial Cell Exposure to 8 h Short-Term Chronic Hypoxia	27666	GSM62244	58
Human Pulmonary Artery Endothelial Cell Exposure to 24 h Short-Term Chronic Hypoxia	42251	GSM62245	47
Normal corneal endothelium	9537	GSM1652	0
Vascular_endothelium_normal breast_associated_P1H12 + _AP_1	34373	GSM384017	0

The last two libraries in italic were not included in the non-glomerular endothelial reference SAGE library based on their failure to be clearly classified of endothelial origin according to our verification analysis as explained in Methods.
NRGN: neurogranin.

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