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Table 4 List of all 18 non-glomerular endothelial SAGE libraries analyzed. 16 were merged to create the non-glomerular endothelial reference SAGE library

From: A SAGE based approach to human glomerular endothelium: defining the transcriptome, finding a novel molecule and highlighting endothelial diversity

SAGE library Number of tags Gene expression omnibus (GEO) dataset number Number of NRGN tag per 200,000
Vascular_endothelium_breast_carcinoma_associated_P1H12 + _AP_DCIS6 65223 GSM384015 9
Vascular_endothelium_hemangioma_B_146 75680 GSM384016 8
Vascular_normal_CS_control 51562 GSM384019 0
Vascular_normal_CS_VEGF+ 57316 GSM384020 7
Endothelium of normal colon 95327 provided by Dr. K. Kinzler 17
Endothelium of colon tumor 95543 provided by Dr. K. Kinzler 2
Microvascular endothelial cells cultured on advanced glycatedfibronectin and exposed to sustained high shear stress 24773 GSM45608 8
Microvascular endothelial cells cultured on fibronectin and exposed to sustained high shear stress 30615 GSM32266 19
Microvascular endothelial cells cultured on fibronectin and exposed to sustained low shear stress 31141 GSM41248 19
Vascular_endothelium_normal_liver_associated_AP_NLEC1 77759 GSM384018 0
Human Aortic Endothelial Cell Exposure to 0 h Short-Term Chronic Hypoxia (Control) 38446 GSM62240 57
Human Aortic Endothelial Cell Exposure to 8 h Short-Term Chronic Hypoxia 40629 GSM62241 39
Human Aortic Endothelial Cell Exposure to 24 h Short-Term Chronic Hypoxia 42371 GSM62242 52
Human Pulmonary Artery Endothelial Cell Exposure to 0 h Short-Term Chronic Hypoxia (Control) 25706 GSM62243 46
Human Pulmonary Artery Endothelial Cell Exposure to 8 h Short-Term Chronic Hypoxia 27666 GSM62244 58
Human Pulmonary Artery Endothelial Cell Exposure to 24 h Short-Term Chronic Hypoxia 42251 GSM62245 47
Normal corneal endothelium 9537 GSM1652 0
Vascular_endothelium_normal breast_associated_P1H12 + _AP_1 34373 GSM384017 0
  1. The last two libraries in italic were not included in the non-glomerular endothelial reference SAGE library based on their failure to be clearly classified of endothelial origin according to our verification analysis as explained in Methods.
  2. NRGN: neurogranin.
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