Table 3 Computation times for phasing and imputation procedures
Procedure | Approximate CPU time (hour:min) |
|---|---|
Phasing reference (N = 242) | |
BEAGLE | 02:30 |
SHAPEIT2 (4 cores) | 52:00 |
Imputing one individual (ref: N = 241, validation: N = 1) | |
BEAGLE with phased reference | 00:50 |
BEAGLE with un-phased reference | 02:50 |
IMPUTE2 with phased reference | 00:05 |
IMPUTE2 with un-phased reference | 41:40 |