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Table 1 List of conditions and/or mutant strains represented in R. capsulatus samples

From: Gene co-expression network analysis in Rhodobacter capsulatus and application to comparative expression analysis of Rhodobacter sphaeroides

Module indexa Strain Growth phaseb Growth conditionc Description Number of replicates
1 (yellow) cckA ML YPS 37°C SB1003 cckA mutant 1
2 (yellow) SBRM1 ML YPS 37°C SB1003 ctrA mutant 3
3 (blue) ALS1 T YPS 37°C gtaI quorum sensing mutant 1
4 (blue) SB1003 T YPS 37°C Wild type 1
5 (blue) ALS1 ML YPS 37°C gtaI quorum sensing mutant 1
6 (blue) SB1003 ML YPS 30°C Wild type 1
7 (blue) SB1003 ML YPS 37°C Wild type 7
8 (green) ALS1 ES RCV 30°C gtaI quorum sensing mutant 1
9 (green) SB1003 ES RCV 30°C Wild type 1
10 (green) SLRK ES RCV 30°C gtaR quorum sensing mutant 1
11 (green) SLRK ML RCV 30°C gtaR quorum sensing mutant 1
12 (green) ALS1 ML RCV 30°C gtaI quorum sensing mutant 1
13 (green) SB1003 ML RCV 30°C Wild type 1
14 (orange) DE442 ML YPS 37°C GTA overproducer 1
15 (orange) DE442 T YPS 37°C GTA overproducer 1
16 (orange) DE442 ES YPS 37°C GTA overproducer 1
17 (orange) DE442 LS YPS 37°C GTA overproducer 1
18 (red) cckA ES YPS 37°C SB1003 cckA mutant 1
19 (red) SBRM1 ES YPS 37°C SB1003 ctrA mutant 3
20 (red) SB1003 LS YPS 37°C Wild type 2
21 (red) SB1003 ES YPS 30°C Wild type 1
22 (red) ALS1 ES YPS 37°C gtaI quorum sensing mutant 1
23 (red) SB1003 ES YPS 37°C Wild type 7
  1. aColours in parentheses correspond to the clusters highlighted in Figures 1 and 2.
  2. bML, mid-logarithmic growth phase; ES, early stationary growth phase; LS, late stationary growth phase; T, the transition point between the logarithmic and stationary phases.
  3. cAll cultures were grown under phototrophic conditions. YPS and RCV represent complex and defined media, respectively.