Table 3 SNPs with homology to genes of putative immune function mapping near to QTL regions
QTL | Closely mapping SNPs with putative immune function | |||||||
|---|---|---|---|---|---|---|---|---|
LG | cM | cM | SNP | GeneID | Length | Hits | E-value | Similarity |
2 | 0, 21.6, 24.5, 30.5, 36.6, 53.5, 61.8* and 62.5 | 47.3 | 24034_664 | proteasome (macropain) 26Â s | 991 | 20 | 3.48E-45 | 62.15% |
| Â | Â | 61.8 | 51997_2402 | runt protein 1a | 2649 | 2 | 5.91E-53 | 84.00% |
5 | 21.2*, 21.9, 22.3, 87* and 96.5 | 21.2 | 45605_1545 | ubiquitin domain-containing protein ubfd1 | 1764 | 20 | 5.32E-81 | 66.7% |
6 | 17.3* 39* and 42.8 | 38.4 | 40050_2030 | 26Â s proteasome subunit s9 | 2299 | 20 | 2.33E-143 | 76.50% |
9 | 10.4 and 59.9 | 59.7 | 42539_708 | E3 ubiquitin-protein ligase RAD18 | 1522 | 20 | 1.62E-51 | 46.90% |
| Â | Â | 59.9 | 37682_953 | complement component | 1318 | 20 | 1.69E-139 | 67.30% |
11 | 24.7, 38.1 and 59.4 | 20.8 | 44253_2858 | ubiquitin protein ligase | 3938 | 20 | 0 | 64.25% |
| Â | Â | 38.4 | 42465_201 | mitogen-activated protein kinase organiser 1 | 853 | 20 | 2.33E-57 | 58.65% |
| Â | Â | 59.4 | 23272_344 | 26Â s protease regulatory subunit | 1579 | 20 | 0 | 87.45% |
15 | 27.2 and 47.8 | 27.7 | 17687_140 | proteasome subunit alpha type-7 | 965 | 20 | 4.28E-101 | 90.05% |
16 | 11, 23.4, 38.1 and 39.2 | 38.1 | 52008_2116 | serine threonine-protein kinase 17b | 3652 | 20 | 7.03E-39 | 83.60% |
17 | 8.3, 26.7, 29 and 54** | 5.6 | 50459_2444 | interleukin enhancer-binding factor 2 | 2645 | 20 | 0 | 86.70% |
| Â | Â | 26.7 | 45405_1355 | stress-induced-phosphoprotein 1 (Hop or HSP70-HSP90 organising protein) | 3508 | 20 | 0 | 70.90% |
| Â | Â | 29.6 | 51513_1353 | ubiquitin conjugation factor e4 | 4762 | 20 | 0 | 68.60% |
| Â | Â | 56.3 | 49912_5110 | mitogen activated protein kinase | 7539 | 20 | 7.36E-150 | 75.90% |
19 | 34.8, 44.5, 70.9 and 82.4* | 28 | 35516_4536 | hect e3 ubiquitin | 4790 | 20 | 0 | 66.25% |
| Â | Â | 37.8 | 47403_548 | heat shock protein isoform a | 1612 | 20 | 6.27E-25 | 64.90% |
| Â | Â | 68.5 | 52376_14757 | hect e3 ubiquitin | 16975 | 20 | 0 | 80.55% |
| Â | Â | 81.8 | 38683_977 | ubiquitin conjugating enzyme 7 interacting protein | 1048 | 20 | 8.96E-79 | 64.65% |
| Â | Â | 95.2 | 48349_91 | proteasome (macropain) 26Â s non- 2 | 3200 | 20 | 0 | 74.85% |
21 | 20.1, 26, 28.5, 28.8 and 89.5 | 80.7 | 46753_1347 | e3 ubiquitin-protein ligase shprh | 1490 | 20 | 3.22E-105 | 70.25% |
22 | 9.1, 20.8, 27.9** | 26 | 42578_2554 | Mitogen-activated protein kinase-binding protein 1 | 2589 | 20 | 0 | 79.6% |
| Â | Â | 27.9 | 52279_11861 | Serine threonine-protein kinase smg1 | 14868 | 20 | 0 | 54.7% |
| Â | Â | 30.3 | 50961_705 | IGF2 mRNA binding protein | 6075 | 20 | 3.02E-138 | 68.90% |
24 | 0.4 and 50.3 | 44.9 | 51084_1046 | ubiquitin-conjugating enzyme e2 c | 3227 | 20 | 2.73E-63 | 80.10% |
25 | 0 | 4.7 | 51361_1388 | inhibitor of kappa light polypeptide gene enhancer in b-kinase complex-associated protein | 4354 | 20 | 1.74E-116 | 57.05% |
28 | 20.8 and 30.6 | 12.6 | 30698_651 | map kinase-activated protein kinase 2-like isoform 2 | 1544 | 20 | 6.12E-139 | 84.45% |
29 | 29.7, 44 and 53.7 | 44 | 49666_3836 | 26Â s proteasome non-atpase regulatory subunit 11-like | 4562 | 20 | 3.62E-64 | 60.15% |
32 | 36.6 | 37.5 | 49114_4840 | ubiquitin carboxyl-terminal hydrolase 47 | 6432 | 20 | 0 | 65.70% |
43 | 0.4* | 2.2 | 45153_220 | aax63905c-type lectin protein | 1167 | 20 | 8.30E-15 | 43.75% |