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Table 3 SNPs with homology to genes of putative immune function mapping near to QTL regions

From: QTL for white spot syndrome virus resistance and the sex-determining locus in the Indian black tiger shrimp (Penaeus monodon)

QTL Closely mapping SNPs with putative immune function
LG cM cM SNP GeneID Length Hits E-value Similarity
2 0, 21.6, 24.5, 30.5, 36.6, 53.5, 61.8* and 62.5 47.3 24034_664 proteasome (macropain) 26 s 991 20 3.48E-45 62.15%
   61.8 51997_2402 runt protein 1a 2649 2 5.91E-53 84.00%
5 21.2*, 21.9, 22.3, 87* and 96.5 21.2 45605_1545 ubiquitin domain-containing protein ubfd1 1764 20 5.32E-81 66.7%
6 17.3* 39* and 42.8 38.4 40050_2030 26 s proteasome subunit s9 2299 20 2.33E-143 76.50%
9 10.4 and 59.9 59.7 42539_708 E3 ubiquitin-protein ligase RAD18 1522 20 1.62E-51 46.90%
   59.9 37682_953 complement component 1318 20 1.69E-139 67.30%
11 24.7, 38.1 and 59.4 20.8 44253_2858 ubiquitin protein ligase 3938 20 0 64.25%
   38.4 42465_201 mitogen-activated protein kinase organiser 1 853 20 2.33E-57 58.65%
   59.4 23272_344 26 s protease regulatory subunit 1579 20 0 87.45%
15 27.2 and 47.8 27.7 17687_140 proteasome subunit alpha type-7 965 20 4.28E-101 90.05%
16 11, 23.4, 38.1 and 39.2 38.1 52008_2116 serine threonine-protein kinase 17b 3652 20 7.03E-39 83.60%
17 8.3, 26.7, 29 and 54** 5.6 50459_2444 interleukin enhancer-binding factor 2 2645 20 0 86.70%
   26.7 45405_1355 stress-induced-phosphoprotein 1 (Hop or HSP70-HSP90 organising protein) 3508 20 0 70.90%
   29.6 51513_1353 ubiquitin conjugation factor e4 4762 20 0 68.60%
   56.3 49912_5110 mitogen activated protein kinase 7539 20 7.36E-150 75.90%
19 34.8, 44.5, 70.9 and 82.4* 28 35516_4536 hect e3 ubiquitin 4790 20 0 66.25%
   37.8 47403_548 heat shock protein isoform a 1612 20 6.27E-25 64.90%
   68.5 52376_14757 hect e3 ubiquitin 16975 20 0 80.55%
   81.8 38683_977 ubiquitin conjugating enzyme 7 interacting protein 1048 20 8.96E-79 64.65%
   95.2 48349_91 proteasome (macropain) 26 s non- 2 3200 20 0 74.85%
21 20.1, 26, 28.5, 28.8 and 89.5 80.7 46753_1347 e3 ubiquitin-protein ligase shprh 1490 20 3.22E-105 70.25%
22 9.1, 20.8, 27.9** 26 42578_2554 Mitogen-activated protein kinase-binding protein 1 2589 20 0 79.6%
   27.9 52279_11861 Serine threonine-protein kinase smg1 14868 20 0 54.7%
   30.3 50961_705 IGF2 mRNA binding protein 6075 20 3.02E-138 68.90%
24 0.4 and 50.3 44.9 51084_1046 ubiquitin-conjugating enzyme e2 c 3227 20 2.73E-63 80.10%
25 0 4.7 51361_1388 inhibitor of kappa light polypeptide gene enhancer in b-kinase complex-associated protein 4354 20 1.74E-116 57.05%
28 20.8 and 30.6 12.6 30698_651 map kinase-activated protein kinase 2-like isoform 2 1544 20 6.12E-139 84.45%
29 29.7, 44 and 53.7 44 49666_3836 26 s proteasome non-atpase regulatory subunit 11-like 4562 20 3.62E-64 60.15%
32 36.6 37.5 49114_4840 ubiquitin carboxyl-terminal hydrolase 47 6432 20 0 65.70%
43 0.4* 2.2 45153_220 aax63905c-type lectin protein 1167 20 8.30E-15 43.75%
  1. *P <0.05; **P <0.01 after Bonferroni correction. GeneID, identity allocated by blast2go using consensus annotations for the top hits. Length, length of query contig sequence. Hits, number of sequences found to match query (maximum 20). E-value, minimum e-value (probability of alignment occurring by chance) recorded for a hit. Similarity, percent mean similarity recorded across hits.