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Table 2 Genome characteristics of P. aeruginosa strains PA99 and PA103

From: Characterization of the core and accessory genomes of Pseudomonas aeruginosa using bioinformatic tools Spine and AGEnt

 

PA99

PA103

# of contigs

142

270

Total contig size (bp)

6,343,993

6,716,795

Contig N50 (bp)

92,875

53,587

Average contig G + C (%)

66.1

66.1

Predicted CDSs (#)

5,739

6,103

Accessory genome size (bp)

688,597

918,208

% of total contigs size

10.8

13.7

Average accessory G + C (%)

59.9%

60.8%

Accessory ORFs (#)

493

732

Transposasesa

2

1

Type I integron genesb

0

0

ICE-associated genesc

101

216

Predicted phage genesd

25

69

  1. aCoding sequences with homology to proteins labeled as transposases or inactivated derivatives in COG database.
  2. bGenes flanked by sul1 and intI1 homologs inclusive of these two genes.
  3. cGenes with homologs in ICEberg protein database.
  4. dGenes contained within intact, questionable, and incomplete prophage regions predicted by PHAST.