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Table 2 Genome characteristics of P. aeruginosa strains PA99 and PA103

From: Characterization of the core and accessory genomes of Pseudomonas aeruginosa using bioinformatic tools Spine and AGEnt

  PA99 PA103
# of contigs 142 270
Total contig size (bp) 6,343,993 6,716,795
Contig N50 (bp) 92,875 53,587
Average contig G + C (%) 66.1 66.1
Predicted CDSs (#) 5,739 6,103
Accessory genome size (bp) 688,597 918,208
% of total contigs size 10.8 13.7
Average accessory G + C (%) 59.9% 60.8%
Accessory ORFs (#) 493 732
Transposasesa 2 1
Type I integron genesb 0 0
ICE-associated genesc 101 216
Predicted phage genesd 25 69
  1. aCoding sequences with homology to proteins labeled as transposases or inactivated derivatives in COG database.
  2. bGenes flanked by sul1 and intI1 homologs inclusive of these two genes.
  3. cGenes with homologs in ICEberg protein database.
  4. dGenes contained within intact, questionable, and incomplete prophage regions predicted by PHAST.