Table 2 Summary of assembly and annotation

Number of reads (both pools)

366,689,206

N/A

Number of putative transcripts (both pools)

194,729

13,211

Average transcript length (bp)

1,005

2,026

Standard deviation (bp)

1,474

1,592

Median transcript length (bp)

439

1,649

Maximum transcript length (bp)

27,655

24,046

Transcripts >1000 bp

50,599

9,657

Transcripts with a Uniref100 hit (e-value < 1e-10)

80,536

11,513

Transcripts matching unique Uniref100 proteins

37,160

9,993

Transcripts with a NR hit (e-value < 1e-10)

80,262

11,497

Transcripts matching unique NR proteins

37,346

10,007

Number of Trinity components

123,175

13,211

Number of ORFs

89,684

13,210

Number of ORFs >450 bp

61,569

11,141

Number of ORFs with a function assigned

57,197

9,811