Skip to main content

Table 7 CoreGenes analysis indicates relationships among small genome myoviruses

From: Characterization of Paenibacillus larvae bacteriophages and their genomic relationships to firmicute bacteriophages

Reference genome (total # of gene products)

phiCD119 (53325 bp)

phiC2 (56,538 bp)

EJ-1 (42935 bp)

KC5a (38239 bp)

AQ113 (36566 bp)

Abouo (45552 bp)

Davies (58572 bp)

Jimmer1/2 (54312 bp)

phiCD119 (79 gp)

79 (100.00%)*

      

phiC2 (82 gp)

40 (50.63%)

82 (100%)

      

phiCD27 (75 gp)

29 (36.71%)

41 (50%)

      

EJ-1 (73 gp)

12 (15.19%)

19 (23.17%)

73 (100%)

     

KC5a (61 gp)

17 (21.52%)

20 (24.39%)

19 (26.03%)

61 (100%)

    

AQ113 (56 gp)

16 (20.25%)

19 (23.17%)

18 (24.66%)

28 (45.9%)

56 (100%)

   

Abouo (94 gp)

19 (24.05%)

25 (30.49%)

21 (28.77%)

19 (31.35%)

19 (33.93%)

94 (100%)

  

Davies (94 gp)

20 (25.32%)

26 (31.71%)

21 (28.77%)

19 (31.35%)

19 (33.93%)

85 (90.43%)

94 (100%)

 

Jimmer1/2 (102 gp)

19 (24.05%)

26 (31.71%)

20 (27.4%)

19 (31.35%)

18 (32.14%)

62 (65.96%)

65 (69.15%)

102 (100%)

Emery (102 gp)

7 (8.86%)

4 (4.88%)

5 (6.85%)

5 (8.2%)

3 (5.36%)

10 (10.64%)

12 (12.77%)

9 (8.82%)

  1. *The number of genes in common is followed by a percentage in parenthesis that represents the% genes in common with the reference genome. Families are typically grouped based on a CoreGenes score of 40% or higher.