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Table 2 Summary of de novo sequence assembly

From: Deep sequencing–based comparative transcriptional profiles of Cymbidium hybridum roots in response to mycorrhizal and non-mycorrhizal beneficial fungi

Software Length distribution of unigene (nt) N50 (bp) Mean (bp) All unigenes (nt) Length of all unigenes (nt)
  100-300 300-500 500-1000 1000-1500 1500-2000 > = 2000     
Trinity 1,603 3,401 4,624 2,927 1,811 2,432 1614 1127 16,798 18,923,761
9.55% 20.24% 27.53% 17.42% 10.78% 14.48%     
SOAPdenovo 87826 28,196 14,169 2,692 734 367 349 329 133,984 44,138,252
65.55% 21.04% 10.58% 2.01% 0.55% 0.27%     
ABySS No data 11,303 8,406 1,550 405 152 593 585 21,816 12,784,421
   51.80% 38.50% 7.10% 1.86% 0.70%