Table 2 Summary of de novo sequence assembly
Software | Length distribution of unigene (nt) | N50 (bp) | Mean (bp) | All unigenes (nt) | Length of all unigenes (nt) | |||||
|---|---|---|---|---|---|---|---|---|---|---|
100-300 | 300-500 | 500-1000 | 1000-1500 | 1500-2000 | > = 2000 | |||||
Trinity | 1,603 | 3,401 | 4,624 | 2,927 | 1,811 | 2,432 | 1614 | 1127 | 16,798 | 18,923,761 |
9.55% | 20.24% | 27.53% | 17.42% | 10.78% | 14.48% | |||||
SOAPdenovo | 87826 | 28,196 | 14,169 | 2,692 | 734 | 367 | 349 | 329 | 133,984 | 44,138,252 |
65.55% | 21.04% | 10.58% | 2.01% | 0.55% | 0.27% | |||||
ABySS | No data | 11,303 | 8,406 | 1,550 | 405 | 152 | 593 | 585 | 21,816 | 12,784,421 |
51.80% | 38.50% | 7.10% | 1.86% | 0.70% | ||||||