Differential motif enrichment analysis of paired ChIP-seq experiments

BMC Genomics

Table 4 Central enrichment of STAT, FOS, MYC and NF- κ B motifs in ChIP-seq peaks in tamoxifen-treated MCF10A-ER-Src cells

The table shows the name and rank (out of 884) of the most significantly enriched motif from each of the four TF families in the peaks of the ChIP-ed TF (top lines) in MCF10A-ER-Src cells treated with tamoxifen for the given time (second lines). The top-ranking motif is also shown even if it is not from one of the four TF families. Rank is based on the CentriMo (non-differential) central enrichment E-value.

ISSN: 1471-2164