Differential motif enrichment analysis of paired ChIP-seq experiments

BMC Genomics

Table 6 MCF10A-ER-Src ChIP-seq data files

TF	Treatment	File name
FOS	36 hr EtOH	wgEncodeAwgTfbsSydhMcf10aesCfosEtoh01HvdUniPk.narrowPeak.gz
	4 hr tamoxifen	wgEncodeAwgTfbsSydhMcf10aesCfosTam14hHvdUniPk.narrowPeak.gz
	12 hr tamoxifen	wgEncodeAwgTfbsSydhMcf10aesCfosTam112hHvdUniPk.narrowPeak.gz
	36 hr tamoxifen	wgEncodeAwgTfbsSydhMcf10aesCfosTamHvdUniPk.narrowPeak.gz
MYC	36 hr EtOH	wgEncodeAwgTfbsSydhMcf10aesCmycEtoh01HvdUniPk.narrowPeak.gz
	4 hr tamoxifen	wgEncodeAwgTfbsSydhMcf10aesCmycTam14hHvdUniPk.narrowPeak.gz
STAT3	36 hr EtOH	wgEncodeAwgTfbsSydhMcf10aesStat3Etoh01UniPk.narrowPeak.gz
	12 hr tamoxifen	wgEncodeAwgTfbsSydhMcf10aesStat3Tam112hHvdUniPk.narrowPeak.gz
	36 hr tamoxifen	wgEncodeAwgTfbsSydhMcf10aesStat3TamUniPk.narrowPeak.gz

The table shows the name of the file (“File Name”) on the UCSC ENCODE website (http://genome.ucsc.edu/ENCODE) containing the ChIP-seq peaks for the given transcription factor (“TF”) assayed in MCF10A-ER-Src cells after treatment with 0.01% ethanol or 1 μm tamoxifen for the stated time (“Treatment”).

ISSN: 1471-2164