Table 3 The numbers and validation results of hub genes in bovine in vivo oocytes and embryos
From: Transcriptional profiles of bovine in vivo pre-implantation development
Stage-specific modules | Total no. of genes/module | Total no. of hub genes/module | No. (%) hub genes (validated in at least one dataset)* | No. (%) hub genes (validated in Kues et al. 2008 [[11]]) |
|---|---|---|---|---|
Oocyte_1 | 2347 | 650 | 211 (32%) | 117 (18%) |
Oocyte_2 | 815 | 125 | 24 (19%) | 6 (5%) |
2-cell | 444 | 112 | 12 (11%) | 11 (10%) |
4-cell | 1868 | 299 | 54 (18%) | 19 (6%) |
8-cell_1 | 229 | 52 | 7 (13%) | 5 (10%) |
8-cell_2 | 640 | 172 | 14 (8%) | 13 (8%) |
16-cell | 247 | 27 | 1 (4%) | 0 (0) |
Early morula | 120 | 15 | 2 (13%) | 2 (13%) |
Compact morula | 311 | 41 | 7 (17%) | 7 (17%) |
Blastocyst_1 | 1049 | 274 | 132 (48%) | 116 (42%) |
Blastocyst_2 | 1366 | 366 | 59 (16%) | 44 (12%) |
Blastocyst_3 | 1010 | 118 | 65 (55%) | 44 (37%) |