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Table 2 Unique small ncRNAs that are upregulated in PGCs, stage X blastoderms, GSCs, and CEFs

From: Small non-coding RNA profiling and the role of piRNA pathway genes in the protection of chicken primordial germ cells

 

PGCs

Stage X

GSCs

CEFs

(PGCs vs Stage X, GSCs, CEFs)

(Stage X vs PGCs, GSCs, CEFs)

(GSCs vs PGCs, Stage X, CEFs)

(CEFs vs PGCs, Stage X, GSCs)

 

Number of unique reads

%

Number of unique reads

%

Number of unique reads

%

Number of unique reads

%

Repeat

14624

55.55

7395

26.50

5

0.10

49

0.96

Unannotated

8394

31.88

9335

33.46

1248

25.13

2181

42.53

rRNAs

1281

4.87

7245

25.96

3141

63.24

1261

24.59

Intron sense

629

2.39

566

2.03

4

0.08

84

1.64

tRNAs

507

1.93

1831

6.56

37

0.74

554

10.80

Intron antisense

320

1.22

180

0.65

8

0.16

51

0.99

Exon sense

251

0.95

435

1.56

49

0.99

67

1.31

scRNA

92

0.35

124

0.44

20

0.40

44

0.86

miRNAs

96

0.36

448

1.61

324

6.52

742

14.47

snoRNA

75

0.28

165

0.59

96

1.93

79

1.54

snRNA

53

0.20

151

0.54

35

0.70

9

0.18

Exon antisense

6

0.02

28

0.10

0

-

7

0.14

Total

26328

100

27903

100

4967

100

5128

100