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Table 5 List of top 20 genic sequences originated piRNAs that upregulated in PGCs

From: Small non-coding RNA profiling and the role of piRNA pathway genes in the protection of chicken primordial germ cells

piRNA seq. ID

Sequence length

Sequences

Origin

Genomic distribution

Associated gene

PGCs

Stage X

GSCs

CEFs

Fold change

(RPKM)

(RPKM)

(RPKM)

(RPKM)

ISG_2943457*

25

GACAGACAGAGCTGCCCCTGAGCCT

Intron_antisense

NM_001146136_intr_4

CHIR-B5

55.72

0

0.87

0

191.65

ISG_1259042*

27

AGACTGAAGATGTGCACCTGACGCCAG

Intron_sense

NM_001146141_intr_4

CHIR-AB1

49.62

0

0.76

0

195.06

ISG_2785619*

26

TTCTGCATGTTGCTCTCTGTCAGCTG

Intron_sense

NM_001030561_intr_5

PLLP

42.92

0

0.33

0

393.64

ISG_2237691

25

AGACTGAAGATCTGCACCTGACACC

Intron_sense

NM_001146136_intr_6

CHIR-B5

35.6

0

0.87

0

122.45

ISG_2022559*

27

TGTTTACTGACTGAGCTACTTTTCCCC

Intron_sense

NM_205163_intr_15

MYO1A

33.41

0

0.11

0

919.25

ISG_2633063*

26

AGGGTACTGAGACATCTTGGAGACAA

Intron_antisense

NM_204716_intr_4

SLC6A2

19.87

0

0.33

0

182.28

ISG_1354003*

21

TTTCCAAGGACCAGTAGCGCT

Intron_sense

NM_205429_intr_1

17.5

18.29

0

0.55

0

100.65

ISG_2087909*

26

TCTCAAAGGATTCCGCATCGTCGACG

Exon_antisense

NM_001030702_exon_1

RAP2B

11.95

0

0

0

1194.81

ISG_3065006*

28

AAGGACCCAAATGGTAGCAGAGGCCATG

Intron_antisense

NM_205186_intr_18

LRP8

9.51

0

0.11

0

261.68

ISG_3356981*

25

AATGCTGAGAACTAAGGATGCCTCC

Intron_sense

NM_205098_intr_2

VDR

7.92

0

0

0

792.48

ISG_3294350*

30

CAGGCTGTGACCCTGGAATTCCACTACACT

Intron_sense

NM_001013397_intr_72

MYH1E

7.44

0

0.11

0

204.65

ISG_2645108*

27

GAGTGTGAGAAGGGCTTTGTGCAGAGC

Exon_antisense

NM_001030695_exon_5

ZNF302

5.24

0

0

0

524.26

ISG_2675670*

23

CGGTGTGGGACGAGAAGGAGAAC

Exon_sense

NM_204729_exon_2

RGN

4.88

0

0

0

487.68

ISG_3080707*

27

CTGTGAGTGTGTGAGTGCGGCGGCGCG

Intron_antisense

NM_204952_intr_1

FOXD2

4.27

0

0.11

0

117.42

ISG_3280151*

24

AAGGACCTCTGAGAATTGCTTTCT

Exon_sense

NM_001030884_exon_12

RASSF2

2.32

0

0

0

231.65

ISG_1621199

27

CAGAAGAGAAGCTGAACACAGGGTGTC

Intron_antisense

NM_001031121_intr_7

VAMP7

1.95

0

0

0

195.07

ISG_882291

28

TTAAAGATATTTGGCTGCCTGGCTCGCC

Intron_sense

NM_001081502_intr_4

NLGN1

1.95

0

0

0

195.07

ISG_2363541

26

AAGGACACCGAGGCTCTGCGTGCTGA

Exon_sense

NM_205525_exon_2

APOA1

1.83

0

0

0

182.88

ISG_2033456

26

TCGGCTCGGCTCGGCTCGGCTCGGCT

Exon_antisense

NM_001006501_exon_1

ADK

1.1

0

0

0

109.73

ISG_950928

27

ATCTGCGTTTAAAGCTCTTTGCACACT

Intron_antisense

NM_001030561_intr_5

PLLP

1.1

0

0

0

109.73

  1. CHIR-B5: immunoglobulin-like receptor CHIR-B5; CHIR-AB1: immunoglobulin-like receptor CHIR-AB1; PLLP: plasmolipin; MYO1A: myosin IA; SLC6A2: solute carrier family 6, member 2; 17.5: lectin-like protein, type II transmembrane protein (17.5); RAP2B: RAP2B, member of RAS oncogene family; LRP8: low density lipoprotein receptor-related protein 8, apolipoprotein e receptor; VDR: vitamin D3 receptor; MYH1E: myosin, heavy chain 1E, skeletal muscle; ZNF302: zinc finger protein 302; RGN: regucalcin; FOXD2: forkhead box D2; RASSF2: Ras association (RalGDS/AF-6) domain family member 2; VAMP7: vesicle-associated membrane protein 7; NLGN1: neuroligin 1; APOA1: apolipoprotein A-I; ADK: adenosine kinase. *piRNAs were examined by qPCR along with their associated genes.
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BMC Genomics

ISSN: 1471-2164

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