EMMAX | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
Trait | CHR | N | SNP | Reg (Mb) | P | q | Bonf. | E | A1 | MAF |
LDL45 | SSC3 | 3 | ASGA0016334 | 124.6-124.8 | 2.82x10e-05 | 0.02 | 0.05 | 0.04 | A | 0.32 |
LDL190 | SSC3 | 2 | ASGA0016334 | 124.8 | 6.42x10e-06 | 0.006 | 0.02 | 0.05 | A | 0.32 |
CHOL45 | SSC16 | 2 | DRGA0015896 | 17.7 | 2.64x10e-05 | 0.01 | 0.03 | -0.05 | T | 0.12 |
CHOL190 | SSC3 | 3 | ASGA0016334 | 124.6-124.8 | 6.82x10e-06* | 0.01 | 0.006 | 0.03 | A | 0.32 |
SSC6 | 5 | ASGA0029689 | 135.0-135.4 | 1.32x10e-05* | 0.01 | 0.03 | -0.03 | G | 0.36 | |
TRIG190 | SSC6 | 4 | ASGA0101719 | 10.2-10.7 | 6.9x10e-05 | 0.03 | 0.1 | 0.06 | G | 0.36 |
6 | ASGA0089937 | 135.0-135.4 | 4.48x10e-06 | 0.006 | 0.01 | 0.06 | A | 0.34 | ||
GEMMA | ||||||||||
LDL45 | SSC3 | 3 | ALGA0021216 | 124.6-124.8 | 1.51x10e-05 | 0.01 | 0.03 | -0.05 | A | 0.33 |
SSC10 | 5 | ASGA0097841 | 2.5-2.9 | 1.90x10e-04 | 0.03 | 0.25 | 0.04 | G | 0.47 | |
5 | MARC0064247 | 18.2-19.3 | 1.77x10e-05 | 0.01 | 0.02 | 0.06 | A | 0.34 | ||
SSC13 | 1 | ALGA0074022 | 215.0 | 1.68x10e-05 | 0.05 | 0.05 | 0.09 | G | 0.07 | |
LDL190 | SSC3 | 2 | ALGA0021216 | 124.8 | 4.03x10e-06 | 0.007 | 0.01 | -0.05 | A | 0.33 |
CHOL45 | SSC3 | 3 | ALGA0021216 | 124.8-133.5 | 4.40x10e-05 | 0.03 | 0.08 | -0.04 | A | 0.33 |
SSC10 | 2 | MARC0064247 | 19.2 | 5.73x10e-05 | 0.04 | 0.07 | 0.04 | A | 0.34 | |
SSC16 | 2 | ASG A0072378 | 17.7 | 1.50x10e-05 | 0.01 | 0.02 | 0.05 | G | 0.12 | |
CHOL190 | SSC3 | 2 | ALGA0021216 | 124.8 | 4.53x10e-06* | 0.004 | 0.01 | -0.04 | A | 0.33 |
SSC6 | 5 | INRA0022506 | 135.0-135.4 | 6.82x10e-06* | 0.01 | 0.02 | 0.03 | A | 0.36 | |
TRIG190 | SSC6 | 4 | MARC0042729 | 10.2-10.7 | 8.68x10e-05 | 0.03 | 0.21 | -0.07 | A | 0.36 |
1 | ASGA0106002 | 68.1 | 1.79x10e-04 | 0.04 | 0.44 | -0.07 | A | 0.43 | ||
6 | ASGA0089937 | 135.0-135.4 | 3.95x10e-06 | 0.01 | 0.01 | -0.07 | A | 0.35 | ||
GenABEL 2 | ||||||||||
LDL45 | SSC3 | 2 | ASGA0016334 | 124.8 | 1.76x10e-05 | 0.01 | 0.03 | -0.51 | A | 0.32 |
SSC13 | 1 | ALGA0074022 | 215.0 | 1.28x10e-05 | 0.03 | 0.03 | 0.94 | G | 0.06 | |
LDL190 | SSC3 | 2 | ASGA0016334 | 124.8 | 6.97x10e-06 | 0.006 | 0.01 | -0.85 | A | 0.32 |
CHOL45 | SSC16 | 2 | DRGA0015896 | 17.7 | 4.06x10e-05 | 0.02 | 0.05 | 0.43 | T | 0.12 |
CHOL190 | SSC3 | 2 | ASGA0016334 | 124.8 | 7.39x10e-06* | 0.007 | 0.01 | -0.54 | A | 0.32 |
SSC6 | 5 | ASGA0029689 | 135.0-135.4 | 1.26x10e-06* | 0.001 | 0.003 | 0.58 | G | 0.36 | |
TRIG45 | SSC10 | 1 | MARC0003307 | 38.0 | 3.12x10e-05 | 0.04 | 0.04 | -0.95 | A | 0.32 |
TRIG190 | SSC6 | 7 | ASGA0089937 | 135.0-136.1 | 2.30x10e-06 | 0.003 | 0.005 | -0.88 | A | 0.34 |
HLD45 | SSC18 | 5 | ALGA0096968 | 9.8-12.2 | 6.68x10e-05 | 0.03 | 0.06 | -1.74 | C | 0.21 |
2 | MARC0006153 | 20.8-22.6 | 6.15x10e-05 | 0.03 | 0.05 | -1.32 | A | 0.46 |