Table 4 Positional concordance between QTL detected by Gallardo et al.[5] and GWAS data generated in the current study
SSC | Trait | QTL Peak | GEMMA (Mb) | EMMAX (Mb) | GenABEL (Mb) | PLINK (Mb) |
|---|---|---|---|---|---|---|
3 | CHOL190 | 72 cM (~122 Mb) | 124.8 | 124.6-124.8 | 124.8 | 124.8-138.6 |
3 | LDL190 | 68 cM (~122 Mb) | 124.8 | 124.8 | 124.8 | 124.8-138.9 |
3 | TRIG190 | 83 cM (~131 Mb) | - | - | - | 126.4-126.9 |
13 | LDL45 | 104 cM (~206 Mb) | 215 | - | - | - |
13 | CHOL190 | 72 cM (~194 Mb) | - | - | - | 180.8-181.9 |
208.3-210.2 | ||||||
13 | LDL190 | 74 cM (~194 Mb) | - | - | - | 180.8-199.5 |
207.6-210.4 |