Table 1 The data quality of mRNA-seq and the transcripts in two genotypes
Summary | Â | Nan Dan Ba Di Da Hua | Earlistaple 7 | ||||
|---|---|---|---|---|---|---|---|
| Â | CK | 4Â h | 24Â h | CK | 4Â h | 24Â h | |
Raw data | Read | 19,277,194 | 12,479,678 | 12,479,678 | 17,969,500 | 17,969,500 | 21,602,254 |
Raw data | Base | 1,927,719,400 | 1,247,967,800 | 1,247,967,800 | 1,796,950,000 | 1,796,950,000 | 2,160,225,400 |
Valid data | Read | 16,097034 | 10,492,532 | 10,492,532 | 15,026,640 | 15,026,640 | 18,100,020 |
Valid data | Base | 1,497,064,827 | 977,315,799 | 977,315,799 | 1,396,615,990 | 1,396,615,990 | 1,685,347,764 |
Valid data | Average length | 93 | 93.14 | 93.14 | 92.94 | 92.94 | 93.11 |
Valid data | Valid ratio | 83.50% | 84.08% | 84.08% | 83.62% | 83.62% | 83.79% |
MapData | Number | 13,688,457 | 12,721,295 | 8,976,783 | 10,560,871 | 12,677,667 | 15,465,674 |
MapData | Data% | 85.04% | 84.29% | 85.55% | 84.58% | 84.37% | 85.45% |
ExpTranscript | Number | 374,204 | 372,440 | 358,476 | 367,228 | 374,490 | 381,094 |
ExpTranscript | Sum. | 809418.58 | 803094.61 | 785100.61 | 819293.67 | 805543.43 | 792193.63 |
ExpTranscript | Transcript% | 87.97% | 87.56% | 84.28% | 86.33% | 88.04% | 89.59% |