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Table 1 The data quality of mRNA-seq and the transcripts in two genotypes

From: Comprehensive analysis of differentially expressed genes and transcriptional regulation induced by salt stress in two contrasting cotton genotypes

Summary   Nan Dan Ba Di Da Hua Earlistaple 7
  CK 4 h 24 h CK 4 h 24 h
Raw data Read 19,277,194 12,479,678 12,479,678 17,969,500 17,969,500 21,602,254
Raw data Base 1,927,719,400 1,247,967,800 1,247,967,800 1,796,950,000 1,796,950,000 2,160,225,400
Valid data Read 16,097034 10,492,532 10,492,532 15,026,640 15,026,640 18,100,020
Valid data Base 1,497,064,827 977,315,799 977,315,799 1,396,615,990 1,396,615,990 1,685,347,764
Valid data Average length 93 93.14 93.14 92.94 92.94 93.11
Valid data Valid ratio 83.50% 84.08% 84.08% 83.62% 83.62% 83.79%
MapData Number 13,688,457 12,721,295 8,976,783 10,560,871 12,677,667 15,465,674
MapData Data% 85.04% 84.29% 85.55% 84.58% 84.37% 85.45%
ExpTranscript Number 374,204 372,440 358,476 367,228 374,490 381,094
ExpTranscript Sum. 809418.58 803094.61 785100.61 819293.67 805543.43 792193.63
ExpTranscript Transcript% 87.97% 87.56% 84.28% 86.33% 88.04% 89.59%