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Table 3 The numbers and distribution rate of unigenes in the databases of NR, SWISS-PROT, TrEMBL, CDD, PRAM, KOG and KEEG

From: Comprehensive analysis of differentially expressed genes and transcriptional regulation induced by salt stress in two contrasting cotton genotypes

Unigene no.

NR

SWISS-PROT

TrEMBL

CDD

PFAM

KOG

KEGG

143080

60,714

33,992

62,473

29,641

54,865

17,958

20,241

 

42.43%

23.76%

43.660%

20.72%

38.35%

12.55%

14.15%

  1. Note: Comparison of the all unigenes with public databases like Non-redundant nucleotide database (NR), SWISS-PROT ((UniProt), TrEMBL and PFAM, KOG and KEGG, respectively, functional annotation was done through gene similarity >30% and e-value <1e-5.
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BMC Genomics

ISSN: 1471-2164

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